Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`LXL04_032601`
Query reference	OH1004
Location	Chr07:26118046-26120981 (+)
Description	Similar to CYP97C1: Carotene epsilon-monooxygenase%2C chloroplastic (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_032601 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 13 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g53130`	Heme-containing cytochrome P450 involved in the biosynthesis of xanthophylls.	Functional analysis of beta- and epsilon-ring carotenoid hydroxylases in Arabidopsis.2003 · DOI: 10.1105/tpc.011403 Elucidation of the beta-carotene hydroxylation pathway in Arabidopsis thaliana.2006 · DOI: 10.1016/j.febslet.2006.07.055 The evolution and function of carotenoid hydroxylases in Arabidopsis.2009 · DOI: 10.1093/pcp/pcp005 Over-expression of Arabidopsis thaliana carotenoid hydroxylases individually and in combination with a beta-carotene ketolase provides insight into in vivo functions.2010 · DOI: 10.1016/j.phytochem.2009.10.011 A quadruple mutant of Arabidopsis reveals a β-carotene hydroxylation activity for LUT1/CYP97C1 and a regulatory role of xanthophylls on determination of the PSI/PSII ratio.2012 · DOI: 10.1186/1471-2229-12-50
`At1g31800`	Heme-containing cytochrome P450 involved in the biosynthesis of xanthophylls.	Defining the primary route for lutein synthesis in plants: the role of Arabidopsis carotenoid beta-ring hydroxylase CYP97A3.2006 · DOI: 10.1073/pnas.0511207103 Elucidation of the beta-carotene hydroxylation pathway in Arabidopsis thaliana.2006 · DOI: 10.1016/j.febslet.2006.07.055 The evolution and function of carotenoid hydroxylases in Arabidopsis.2009 · DOI: 10.1093/pcp/pcp005
`At4g15110`	Heme-containing cytochrome P450 probably involved in the biosynthesis of xanthophylls.	Over-expression of Arabidopsis thaliana carotenoid hydroxylases individually and in combination with a beta-carotene ketolase provides insight into in vivo functions.2010 · DOI: 10.1016/j.phytochem.2009.10.011

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0016117	carotenoid biosynthetic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=81.693; coverage=88.656; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0016123	xanthophyll biosynthetic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=47.563; coverage=89.529; evalue=2.13e-159; UniProt GO evidence=IGI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005829	cytosol	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=42.857; coverage=90.401; evalue=1.15e-136; UniProt GO evidence=HDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009507	chloroplast	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=81.693; coverage=88.656; evalue=0.0; UniProt GO evidence=HDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009570	chloroplast stroma	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=42.857; coverage=90.401; evalue=1.15e-136; UniProt GO evidence=HDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009941	chloroplast envelope	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=81.693; coverage=88.656; evalue=0.0; UniProt GO evidence=HDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0031969	chloroplast membrane	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=41.61; coverage=101.92; evalue=5.89e-142; UniProt GO evidence=IEA:UniProtKB-SubCell	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0004497	monooxygenase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=41.61; coverage=101.92; evalue=5.89e-142; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005506	iron ion binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=81.693; coverage=88.656; evalue=0.0; UniProt GO evidence=IEA:InterPro	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010291	beta-carotene 3-hydroxylase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=47.563; coverage=89.529; evalue=2.13e-159; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=47.563; coverage=89.529; evalue=2.13e-159; UniProt GO evidence=IEA:InterPro	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0020037	heme binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=81.693; coverage=88.656; evalue=0.0; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0072374	carotene epsilon hydroxylase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=81.693; coverage=88.656; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G31800	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=47.563; coverage=89.529; evalue=2.13e-159	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT3G53130	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=81.693; coverage=88.656; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT4G15110	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=42.857; coverage=90.401; evalue=1.15e-136	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	gmx:606504	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=41.61; coverage=101.92; evalue=5.89e-142	UniProtKB/Swiss-Prot DAT 2026 current_release