Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_032502 |
|---|---|
| Query reference | OH1004 |
| Location | Chr07:24138221-24140259 (-) |
| Description | Similar to abh1: Alpha-ketoglutarate-dependent dioxygenase abh1 (Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX%3D284812) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_032502 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 20 GO annotations and 7 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At3g14160 |
Dioxygenase that catalyzes DNA N(6)-methyladenine (6 mA) demethylation with a low efficiency. | |
At5g01780 |
Dioxygenase that catalyzes DNA N(6)-methyladenine (6 mA) demethylation to modulate gene expression and regulate seed germination. | |
At3g14140 |
Dioxygenase that may catalyze DNA N(6)-methyladenine (6 mA) demethylation (By similarity). | No verified direct reference in this release |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0006281 | DNA repair | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.147; coverage=66.442; evalue=6.88e-93; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006307 | DNA alkylation repair | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=27.434; coverage=38.111; evalue=6.24e-13; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009845 | seed germination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=58.222; coverage=37.943; evalue=2.91e-83; UniProt GO evidence=IGI:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010029 | regulation of seed germination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=58.222; coverage=37.943; evalue=2.91e-83; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0035513 | oxidative RNA demethylation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.147; coverage=66.442; evalue=6.88e-93; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042245 | RNA repair | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=27.434; coverage=38.111; evalue=6.24e-13; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0070989 | oxidative demethylation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=27.434; coverage=38.111; evalue=6.24e-13; UniProt GO evidence=IDA:EcoliWiki | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0072702 | response to methyl methanesulfonate | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=27.434; coverage=38.111; evalue=6.24e-13; UniProt GO evidence=IMP:EcoCyc | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1990983 | regulation of translational initiation by tRNA modification | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=29.032; coverage=41.821; evalue=5.7e-17; UniProt GO evidence=ISS:PomBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.147; coverage=66.442; evalue=6.88e-93; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005737 | cytoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.147; coverage=66.442; evalue=6.88e-93; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005829 | cytosol | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=29.032; coverage=41.821; evalue=5.7e-17; UniProt GO evidence=HDA:PomBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008198 | ferrous iron binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.147; coverage=66.442; evalue=6.88e-93; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0035514 | DNA demethylase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=58.222; coverage=37.943; evalue=2.91e-83; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0035515 | oxidative RNA demethylase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.147; coverage=66.442; evalue=6.88e-93; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0035516 | broad specificity oxidative DNA demethylase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.147; coverage=66.442; evalue=6.88e-93; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0046872 | metal ion binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=29.032; coverage=41.821; evalue=5.7e-17; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0051213 | dioxygenase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=27.434; coverage=38.111; evalue=6.24e-13; UniProt GO evidence=IDA:EcoliWiki | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0141131 | DNA N6-methyladenine demethylase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.147; coverage=66.442; evalue=6.88e-93; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1990984 | tRNA demethylase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=29.032; coverage=41.821; evalue=5.7e-17; UniProt GO evidence=ISS:PomBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT3G14140 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=50.566; coverage=44.688; evalue=9.84e-77 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT3G14160 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.147; coverage=66.442; evalue=6.88e-93 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT5G01780 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=58.222; coverage=37.943; evalue=2.91e-83 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ecj:JW2200 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=27.434; coverage=38.111; evalue=6.24e-13 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | eco:b2212 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=27.434; coverage=38.111; evalue=6.24e-13 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ecoc:C3026_12360 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=27.434; coverage=38.111; evalue=6.24e-13 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | spo:2539935 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=29.032; coverage=41.821; evalue=5.7e-17 | UniProtKB/Swiss-Prot DAT 2026 current_release |