Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`LXL04_032297`
Query reference	OH1004
Location	Chr07:20047718-20049523 (+)
Description	Similar to BIG5: Brefeldin A-inhibited guanine nucleotide-exchange protein 5 (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_032297 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 38 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g43300`	Activates the ARF proteins by exchanging bound GDP for free GTP.	Effector-triggered immunity blocks pathogen degradation of an immunity-associated vesicle traffic regulator in Arabidopsis.2011 · DOI: 10.1073/pnas.1103338108
`At4g15900`	Pleiotropic regulator of glucose, stress and hormone responses.	Regulatory interaction of PRL1 WD protein with Arabidopsis SNF1-like protein kinases.1999 · DOI: 10.1073/pnas.96.9.5322 SKP1-SnRK protein kinase interactions mediate proteasomal binding of a plant SCF ubiquitin ligase.2001 · DOI: 10.1093/emboj/20.11.2742 Regulation of plant innate immunity by three proteins in a complex conserved across the plant and animal kingdoms.2007 · DOI: 10.1101/gad.1559607 Signaling from an altered cell wall to the nucleus mediates sugar-responsive growth and development in Arabidopsis thaliana.2007 · DOI: 10.1105/tpc.106.049965 Characterization of Arabidopsis and rice DWD proteins and their roles as substrate receptors for CUL4-RING E3 ubiquitin ligases.2008 · DOI: 10.1105/tpc.107.055418 Modulation of O-mediated retrograde signaling by the PLEIOTROPIC RESPONSE LOCUS 1 (PRL1) protein, a central integrator of stress and energy signaling.2009 · DOI: 10.1111/j.1365-313x.2009.03935.x Pleiotropic regulatory locus 1 (PRL1) integrates the regulation of sugar responses with isoprenoid metabolism in Arabidopsis.2010 · DOI: 10.1093/mp/ssp100 Pleiotropic control of glucose and hormone responses by PRL1, a nuclear WD protein, in Arabidopsis.1998 · DOI: 10.1101/gad.12.19.3059
`At3g16650`	Pleiotropic regulator.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0000398	mRNA splicing, via spliceosome	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=67.073; coverage=30.037; evalue=6.48e-27; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006396	RNA processing	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=67.073; coverage=30.037; evalue=6.48e-27; UniProt GO evidence=IGI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006886	intracellular protein transport	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.136; coverage=32.234; evalue=1.68e-32; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006897	endocytosis	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.136; coverage=32.234; evalue=1.68e-32; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006955	immune response	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.136; coverage=32.234; evalue=1.68e-32; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009734	auxin-activated signaling pathway	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.136; coverage=32.234; evalue=1.68e-32; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009749	response to glucose	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=67.073; coverage=30.037; evalue=6.48e-27; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009755	hormone-mediated signaling pathway	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=67.073; coverage=30.037; evalue=6.48e-27; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010154	fruit development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=67.073; coverage=30.037; evalue=6.48e-27; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010182	sugar mediated signaling pathway	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=67.073; coverage=30.037; evalue=6.48e-27; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010215	cellulose microfibril organization	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=67.073; coverage=30.037; evalue=6.48e-27; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0016192	vesicle-mediated transport	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.136; coverage=32.234; evalue=1.68e-32; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0016567	protein ubiquitination	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=67.073; coverage=30.037; evalue=6.48e-27; UniProt GO evidence=IEA:UniProtKB-UniPathway	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0031338	regulation of vesicle fusion	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.136; coverage=32.234; evalue=1.68e-32; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0032012	regulation of ARF protein signal transduction	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.136; coverage=32.234; evalue=1.68e-32; UniProt GO evidence=IEA:InterPro	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0042742	defense response to bacterium	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.136; coverage=32.234; evalue=1.68e-32; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0045087	innate immune response	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.136; coverage=32.234; evalue=1.68e-32; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0045292	mRNA cis splicing, via spliceosome	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=47.115; coverage=38.095; evalue=6.03e-20; UniProt GO evidence=IMP:PomBase	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0045892	negative regulation of DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=67.073; coverage=30.037; evalue=6.48e-27; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0048364	root development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=67.073; coverage=30.037; evalue=6.48e-27; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0048366	leaf development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=67.073; coverage=30.037; evalue=6.48e-27; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0048825	cotyledon development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=67.073; coverage=30.037; evalue=6.48e-27; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0050832	defense response to fungus	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=67.073; coverage=30.037; evalue=6.48e-27; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:2000012	regulation of auxin polar transport	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.136; coverage=32.234; evalue=1.68e-32; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:2000067	regulation of root morphogenesis	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.136; coverage=32.234; evalue=1.68e-32; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000974	Prp19 complex	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=67.073; coverage=30.037; evalue=6.48e-27; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.136; coverage=32.234; evalue=1.68e-32; UniProt GO evidence=ISM:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005681	spliceosomal complex	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=47.115; coverage=38.095; evalue=6.03e-20; UniProt GO evidence=IDA:PomBase	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005737	cytoplasm	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=46.939; coverage=35.897; evalue=1.79e-19; UniProt GO evidence=IEA:UniProtKB-SubCell	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005769	early endosome	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.136; coverage=32.234; evalue=1.68e-32; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005802	trans-Golgi network	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.136; coverage=32.234; evalue=1.68e-32; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005829	cytosol	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.136; coverage=32.234; evalue=1.68e-32; UniProt GO evidence=HDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0016607	nuclear speck	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=67.073; coverage=30.037; evalue=6.48e-27; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0031901	early endosome membrane	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.136; coverage=32.234; evalue=1.68e-32; UniProt GO evidence=IEA:UniProtKB-SubCell	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0071013	catalytic step 2 spliceosome	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=67.073; coverage=30.037; evalue=6.48e-27; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0071014	post-mRNA release spliceosomal complex	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=47.115; coverage=38.095; evalue=6.03e-20; UniProt GO evidence=IDA:PomBase	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0080008	Cul4-RING E3 ubiquitin ligase complex	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=67.073; coverage=30.037; evalue=6.48e-27; UniProt GO evidence=IPI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005085	guanyl-nucleotide exchange factor activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.136; coverage=32.234; evalue=1.68e-32; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ani:ANIA_01208	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=46.939; coverage=35.897; evalue=1.79e-19	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT3G16650	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=65.854; coverage=30.037; evalue=2.56e-26	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT3G43300	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.136; coverage=32.234; evalue=1.68e-32	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT4G15900	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=67.073; coverage=30.037; evalue=6.48e-27	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	spo:3361260	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=47.115; coverage=38.095; evalue=6.03e-20	UniProtKB/Swiss-Prot DAT 2026 current_release