Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_032288 |
|---|---|
| Query reference | OH1004 |
| Location | Chr07:19959665-19962473 (-) |
| Description | Similar to SRD2: snRNA-activating protein complex subunit (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_032288 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 23 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At1g28560 |
Transcription activator of small-nuclear RNA genes (snRNA), which have essential roles in pre-mRNA splicing and rRNA processing. |
Isolation of Temperature-Sensitive Mutants of Arabidopsis thaliana That Are Defective in the Redifferentiation of Shoots.1994 · DOI: 10.1104/pp.105.3.815 Protein tyrosine phosphorylation during phytohormone-stimulated cell proliferation in Arabidopsis Hypocotyls.2003 · DOI: 10.1093/pcp/pcg082 Involvement of SRD2-mediated activation of snRNA transcription in the control of cell proliferation competence in Arabidopsis.2005 · DOI: 10.1111/j.1365-313x.2005.02469.x Differential requirement for the function of SRD2, an snRNA transcription activator, in various stages of plant development.2008 · DOI: 10.1007/s11103-007-9271-7
|
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0009301 | snRNA transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=51.02; coverage=77.602; evalue=9.28e-107; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009734 | auxin-activated signaling pathway | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=51.02; coverage=77.602; evalue=9.28e-107; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009926 | auxin polar transport | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=51.02; coverage=77.602; evalue=9.28e-107; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009942 | longitudinal axis specification | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=51.02; coverage=77.602; evalue=9.28e-107; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009945 | radial axis specification | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=51.02; coverage=77.602; evalue=9.28e-107; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010014 | meristem initiation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=51.02; coverage=77.602; evalue=9.28e-107; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010311 | lateral root formation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=51.02; coverage=77.602; evalue=9.28e-107; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042795 | snRNA transcription by RNA polymerase II | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=51.02; coverage=77.602; evalue=9.28e-107; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042796 | snRNA transcription by RNA polymerase III | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=51.02; coverage=77.602; evalue=9.28e-107; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0043697 | cell dedifferentiation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=51.02; coverage=77.602; evalue=9.28e-107; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0060184 | cell cycle switching | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=51.02; coverage=77.602; evalue=9.28e-107; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071365 | cellular response to auxin stimulus | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=51.02; coverage=77.602; evalue=9.28e-107; UniProt GO evidence=IEP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071368 | cellular response to cytokinin stimulus | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=51.02; coverage=77.602; evalue=9.28e-107; UniProt GO evidence=IEP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1905392 | plant organ morphogenesis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=51.02; coverage=77.602; evalue=9.28e-107; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=51.02; coverage=77.602; evalue=9.28e-107; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005654 | nucleoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=34.008; coverage=55.882; evalue=3.68e-40; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005730 | nucleolus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=32.197; coverage=59.729; evalue=1.1e-38; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016604 | nuclear body | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=32.197; coverage=59.729; evalue=1.1e-38; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0019185 | snRNA-activating protein complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=51.02; coverage=77.602; evalue=9.28e-107; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000978 | RNA polymerase II cis-regulatory region sequence-specific DNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=31.835; coverage=60.407; evalue=6.22e-38; UniProt GO evidence=IEA:TreeGrafter | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0001006 | RNA polymerase III type 3 promoter sequence-specific DNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=51.02; coverage=77.602; evalue=9.28e-107; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0001046 | core promoter sequence-specific DNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=31.835; coverage=60.407; evalue=6.22e-38; UniProt GO evidence=IEA:TreeGrafter | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003681 | bent DNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=51.02; coverage=77.602; evalue=9.28e-107; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT1G28560 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=51.02; coverage=77.602; evalue=9.28e-107 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | mcf:101865660 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=31.835; coverage=60.407; evalue=6.22e-38 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | mmu:77634 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=32.197; coverage=59.729; evalue=1.1e-38 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | rno:362537 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=34.008; coverage=55.882; evalue=3.68e-40 | UniProtKB/Swiss-Prot DAT 2026 current_release |