Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`LXL04_031723`
Query reference	OH1004
Location	Chr07:10237339-10238908 (-)
Description	Similar to MRG2: Protein MRG2 (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_031723 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 28 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g02740`	Chromatin remodeling factor.	Arabidopsis MRG domain proteins bridge two histone modifications to elevate expression of flowering genes.2014 · DOI: 10.1093/nar/gku781 Regulation of arabidopsis flowering by the histone mark readers MRG1/2 via interaction with CONSTANS to modulate FT expression.2014 · DOI: 10.1371/journal.pgen.1004617
`At4g37280`	Chromatin remodeling factor.	Arabidopsis MRG domain proteins bridge two histone modifications to elevate expression of flowering genes.2014 · DOI: 10.1093/nar/gku781 Regulation of arabidopsis flowering by the histone mark readers MRG1/2 via interaction with CONSTANS to modulate FT expression.2014 · DOI: 10.1371/journal.pgen.1004617

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0000724	double-strand break repair via homologous recombination	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=31.475; coverage=106.272; evalue=8.2e-36; UniProt GO evidence=ISS:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006281	DNA repair	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=32.095; coverage=103.136; evalue=3.07e-34; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006325	chromatin organization	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=44.518; coverage=104.878; evalue=1.96e-72; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006335	DNA replication-dependent chromatin assembly	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=32.095; coverage=103.136; evalue=3.07e-34; UniProt GO evidence=IEA:EnsemblFungi	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006337	nucleosome disassembly	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=32.095; coverage=103.136; evalue=3.07e-34; UniProt GO evidence=IEA:EnsemblFungi	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006351	DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=44.409; coverage=109.059; evalue=2e-75; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006355	regulation of DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=44.409; coverage=109.059; evalue=2e-75; UniProt GO evidence=IEA:InterPro	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006368	transcription elongation by RNA polymerase II	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=32.095; coverage=103.136; evalue=3.07e-34; UniProt GO evidence=IEA:EnsemblFungi	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0008283	cell population proliferation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=31.475; coverage=106.272; evalue=8.2e-36; UniProt GO evidence=ISO:RGD	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0030174	regulation of DNA-templated DNA replication initiation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=32.095; coverage=103.136; evalue=3.07e-34; UniProt GO evidence=IEA:EnsemblFungi	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0032968	positive regulation of transcription elongation by RNA polymerase II	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=32.095; coverage=103.136; evalue=3.07e-34; UniProt GO evidence=IEA:EnsemblFungi	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0040029	epigenetic regulation of gene expression	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=44.409; coverage=109.059; evalue=2e-75; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0043487	regulation of RNA stability	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=32.095; coverage=103.136; evalue=3.07e-34; UniProt GO evidence=IEA:EnsemblFungi	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0048510	regulation of timing of transition from vegetative to reproductive phase	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=44.409; coverage=109.059; evalue=2e-75; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0048586	regulation of long-day photoperiodism, flowering	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=44.409; coverage=109.059; evalue=2e-75; UniProt GO evidence=IGI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0051726	regulation of cell cycle	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=31.475; coverage=106.272; evalue=8.2e-36; UniProt GO evidence=ISO:RGD	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0060195	negative regulation of antisense RNA transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=32.095; coverage=103.136; evalue=3.07e-34; UniProt GO evidence=IEA:EnsemblFungi	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:1905168	positive regulation of double-strand break repair via homologous recombination	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=31.475; coverage=106.272; evalue=8.2e-36; UniProt GO evidence=ISO:RGD	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000123	histone acetyltransferase complex	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=44.409; coverage=109.059; evalue=2e-75; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000786	nucleosome	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=31.475; coverage=106.272; evalue=8.2e-36; UniProt GO evidence=ISO:RGD	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=44.409; coverage=109.059; evalue=2e-75; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0016607	nuclear speck	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=31.475; coverage=106.272; evalue=8.2e-36; UniProt GO evidence=ISO:RGD	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0032221	Rpd3S complex	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=32.095; coverage=103.136; evalue=3.07e-34; UniProt GO evidence=IEA:EnsemblFungi	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0035267	NuA4 histone acetyltransferase complex	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=44.518; coverage=104.878; evalue=1.96e-72; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0070822	Sin3-type complex	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=31.475; coverage=106.272; evalue=8.2e-36; UniProt GO evidence=ISS:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003682	chromatin binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=31.475; coverage=106.272; evalue=8.2e-36; UniProt GO evidence=ISO:RGD	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0140003	histone H3K36me3 reader activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=44.409; coverage=109.059; evalue=2e-75; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:1990841	promoter-specific chromatin binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=44.409; coverage=109.059; evalue=2e-75; UniProt GO evidence=IPI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G02740	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=44.409; coverage=109.059; evalue=2e-75	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT4G37280	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=44.518; coverage=104.878; evalue=1.96e-72	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	dha:DEHA2D03784g	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=32.095; coverage=103.136; evalue=3.07e-34	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	pon:100174761	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=30.164; coverage=106.272; evalue=1.1e-34	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	rno:300891	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=31.475; coverage=106.272; evalue=8.2e-36	UniProtKB/Swiss-Prot DAT 2026 current_release