Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_031586 |
|---|---|
| Query reference | OH1004 |
| Location | Chr07:7975943-7978815 (-) |
| Description | Similar to CSN4: COP9 signalosome complex subunit 4 (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_031586 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 11 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At5g42970 |
Component of the COP9 signalosome complex (CSN), a complex involved in various cellular and developmental processes such as photomorphogenesis and auxin and jasmonate responses. |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0000338 | protein deneddylation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=84.887; coverage=100.0; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009585 | red, far-red light phototransduction | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=84.887; coverage=100.0; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009640 | photomorphogenesis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=84.887; coverage=100.0; evalue=0.0; UniProt GO evidence=TAS:TIGR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010100 | negative regulation of photomorphogenesis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=84.887; coverage=100.0; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010971 | positive regulation of G2/M transition of mitotic cell cycle | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=84.887; coverage=100.0; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=48.429; coverage=96.222; evalue=3.78e-121; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005737 | cytoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=84.887; coverage=100.0; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005829 | cytosol | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=48.698; coverage=96.725; evalue=3.74e-121; UniProt GO evidence=IEA:UniProtKB-ARBA | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008180 | COP9 signalosome | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=84.887; coverage=100.0; evalue=0.0; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016607 | nuclear speck | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=48.429; coverage=96.222; evalue=3.78e-121; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0032991 | protein-containing complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=84.887; coverage=100.0; evalue=0.0; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT5G42970 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=84.887; coverage=100.0; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | bta:540223 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=48.698; coverage=96.725; evalue=3.74e-121 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ddi:DDB_G0293844 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=48.303; coverage=96.474; evalue=4.09e-123 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | rno:360915 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=48.429; coverage=96.222; evalue=3.78e-121 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ssc:100125960 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=48.698; coverage=96.725; evalue=5.19e-121 | UniProtKB/Swiss-Prot DAT 2026 current_release |