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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_031530
Query referenceOH1004
LocationChr07:7173707-7176689 (-)
DescriptionSimilar to rcc2: Protein RCC2 homolog (Xenopus laevis OX%3D8355)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_031530 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 42 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g63860 UV-B specific signaling component that acts as a UV-B photoreceptor and plays a key role in establishing UV-protective responses in plants.
A UV-B-specific signaling component orchestrates plant UV protection.2005 · DOI: 10.1073/pnas.0507187102
UV-B promotes rapid nuclear translocation of the Arabidopsis UV-B specific signaling component UVR8 and activates its function in the nucleus.2007 · DOI: 10.1105/tpc.107.053330
UV-B signaling pathways with different fluence-rate response profiles are distinguished in mature Arabidopsis leaf tissue by requirement for UVR8, HY5, and HYH.2008 · DOI: 10.1104/pp.107.108456
Interaction of COP1 and UVR8 regulates UV-B-induced photomorphogenesis and stress acclimation in Arabidopsis.2009 · DOI: 10.1038/emboj.2009.4
UVR8 in Arabidopsis thaliana regulates multiple aspects of cellular differentiation during leaf development in response to ultraviolet B radiation.2009 · DOI: 10.1111/j.1469-8137.2009.02855.x
Negative feedback regulation of UV-B-induced photomorphogenesis and stress acclimation in Arabidopsis.2010 · DOI: 10.1073/pnas.0914532107
Functional interaction of the circadian clock and UV RESISTANCE LOCUS 8-controlled UV-B signaling pathways in Arabidopsis thaliana.2011 · DOI: 10.1111/j.1365-313x.2011.04573.x
Perception of UV-B by the Arabidopsis UVR8 protein.2011 · DOI: 10.1126/science.1200660
UVR8 mediates UV-B-induced Arabidopsis defense responses against Botrytis cinerea by controlling sinapate accumulation.2012 · DOI: 10.1093/mp/sss025
C-terminal region of the UV-B photoreceptor UVR8 initiates signaling through interaction with the COP1 protein.2012 · DOI: 10.1073/pnas.1210898109
In vivo function of tryptophans in the Arabidopsis UV-B photoreceptor UVR8.2012 · DOI: 10.1105/tpc.112.101451
The UV-B photoreceptor UVR8 promotes photosynthetic efficiency in Arabidopsis thaliana exposed to elevated levels of UV-B.2012 · DOI: 10.1007/s11120-012-9785-y

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0007229integrin-mediated signaling pathwayBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=36.054; coverage=84.808; evalue=6.66e-83; UniProt GO evidence=ISO:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009411response to UVBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=31.034; coverage=66.923; evalue=1.1e-35; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009649entrainment of circadian clockBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=31.034; coverage=66.923; evalue=1.1e-35; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010224response to UV-BBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=31.034; coverage=66.923; evalue=1.1e-35; UniProt GO evidence=IGI:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010762regulation of fibroblast migrationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=36.054; coverage=84.808; evalue=6.66e-83; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010971positive regulation of G2/M transition of mitotic cell cycleBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=36.054; coverage=84.808; evalue=6.66e-83; UniProt GO evidence=ISO:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0030334regulation of cell migrationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=36.054; coverage=84.808; evalue=6.66e-83; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0034260negative regulation of GTPase activityBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=36.054; coverage=84.808; evalue=6.66e-83; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0045184establishment of protein localizationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=36.054; coverage=84.808; evalue=6.66e-83; UniProt GO evidence=IGI:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0048041focal adhesion assemblyBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=36.054; coverage=84.808; evalue=6.66e-83; UniProt GO evidence=ISO:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0051301cell divisionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=36.117; coverage=85.192; evalue=2.56e-84; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0051895negative regulation of focal adhesion assemblyBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=36.054; coverage=84.808; evalue=6.66e-83; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0051987positive regulation of attachment of spindle microtubules to kinetochoreBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=36.117; coverage=85.192; evalue=2.56e-84; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0072356chromosome passenger complex localization to kinetochoreBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=36.117; coverage=85.192; evalue=2.56e-84; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0090630activation of GTPase activityBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=36.054; coverage=84.808; evalue=6.66e-83; UniProt GO evidence=IGI:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:1900025negative regulation of substrate adhesion-dependent cell spreadingBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=36.054; coverage=84.808; evalue=6.66e-83; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:1900027regulation of ruffle assemblyBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=36.054; coverage=84.808; evalue=6.66e-83; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000775chromosome, centromeric regionCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=36.117; coverage=85.192; evalue=2.56e-84; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000785chromatinCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=31.034; coverage=66.923; evalue=1.1e-35; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=36.054; coverage=84.808; evalue=6.66e-83; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005730nucleolusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=36.117; coverage=85.192; evalue=2.56e-84; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005737cytoplasmCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=31.034; coverage=66.923; evalue=1.1e-35; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005819spindleCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=36.117; coverage=85.192; evalue=2.56e-84; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005829cytosolCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=34.91; coverage=85.385; evalue=1.25e-82; UniProt GO evidence=TAS:ReactomeUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005874microtubuleCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=36.054; coverage=84.808; evalue=6.66e-83; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005886plasma membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=36.117; coverage=85.192; evalue=2.56e-84; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009536plastidCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=31.034; coverage=66.923; evalue=1.1e-35; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016020membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=36.117; coverage=85.192; evalue=2.56e-84; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0030496midbodyCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=36.117; coverage=85.192; evalue=2.56e-84; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0031901early endosome membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=36.054; coverage=84.808; evalue=6.66e-83; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0034506chromosome, centromeric core domainCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=36.054; coverage=84.808; evalue=6.66e-83; UniProt GO evidence=ISO:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:1990023mitotic spindle midzoneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=36.054; coverage=84.808; evalue=6.66e-83; UniProt GO evidence=ISO:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003682chromatin bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=31.034; coverage=66.923; evalue=1.1e-35; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003723RNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=34.91; coverage=85.385; evalue=1.25e-82; UniProt GO evidence=HDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005085guanyl-nucleotide exchange factor activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=36.054; coverage=84.808; evalue=6.66e-83; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0008017microtubule bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=36.054; coverage=84.808; evalue=6.66e-83; UniProt GO evidence=ISO:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009881photoreceptor activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=31.034; coverage=66.923; evalue=1.1e-35; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0019901protein kinase bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=36.054; coverage=84.808; evalue=6.66e-83; UniProt GO evidence=ISO:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0019904protein domain specific bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=36.054; coverage=84.808; evalue=6.66e-83; UniProt GO evidence=ISO:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0031267small GTPase bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=36.117; coverage=85.192; evalue=2.56e-84; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0042802identical protein bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=31.034; coverage=66.923; evalue=1.1e-35; UniProt GO evidence=IPI:IntActUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0042803protein homodimerization activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=31.034; coverage=66.923; evalue=1.1e-35; UniProt GO evidence=IPI:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT5G63860KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=31.034; coverage=66.923; evalue=1.1e-35UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdre:406455KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=35.44; coverage=85.192; evalue=8.43e-80UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGhsa:55920KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=34.91; coverage=85.385; evalue=1.25e-82UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGmmu:108911KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=36.054; coverage=84.808; evalue=6.66e-83UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGxla:734455KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=36.117; coverage=85.192; evalue=2.56e-84UniProtKB/Swiss-Prot DAT 2026 current_release