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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_031409
Query referenceOH1004
LocationChr07:5498532-5502221 (+)
DescriptionSimilar to PYG7: Tetratricopeptide repeat domain-containing protein PYG7%2C chloroplastic (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_031409 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 4 GO annotations and 2 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g22700 Nuclear genome-encoded factor required for the accumulation of photosystem I (PSI).
The evolutionarily conserved tetratrico peptide repeat protein pale yellow green7 is required for photosystem I accumulation in Arabidopsis and copurifies with the complex.2006 · DOI: 10.1104/pp.106.078147
PSA3, a Protein on the Stromal Face of the Thylakoid Membrane, Promotes Photosystem I Accumulation in Cooperation with the Assembly Factor PYG7.2017 · DOI: 10.1104/pp.17.00524

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0048564photosystem I assemblyBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.856; coverage=102.623; evalue=1.09e-115; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.856; coverage=102.623; evalue=1.09e-115; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009507chloroplastCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.856; coverage=102.623; evalue=1.09e-115; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009535chloroplast thylakoid membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.856; coverage=102.623; evalue=1.09e-115; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT1G22700KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.856; coverage=102.623; evalue=1.09e-115UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGzma:100279224KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=65.152; coverage=86.557; evalue=1.89e-107UniProtKB/Swiss-Prot DAT 2026 current_release