Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_031232 |
|---|---|
| Query reference | OH1004 |
| Location | Chr07:2874436-2881367 (-) |
| Description | Similar to TIR1: Protein TRANSPORT INHIBITOR RESPONSE 1 (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_031232 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 25 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At3g62980 |
Auxin receptor that mediates Aux/IAA proteins proteasomal degradation and auxin-regulated transcription. |
Identification of an SCF ubiquitin-ligase complex required for auxin response in Arabidopsis thaliana.1999 · DOI: 10.1101/gad.13.13.1678 Five components of the ethylene-response pathway identified in a screen for weak ethylene-insensitive mutants in Arabidopsis.2003 · DOI: 10.1073/pnas.0438070100 A plant miRNA contributes to antibacterial resistance by repressing auxin signaling.2006 · DOI: 10.1126/science.1126088
|
At1g12820 |
Confers sensitivity to the virulent bacterial pathogen P.syringae (By similarity). | No verified direct reference in this release |
At4g03190 |
Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins. | |
At3g26810 |
Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins. |
Rice
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
Os04g0395600 |
Transport inhibitor response 1-like protein Os04g0395600. | No verified direct reference in this release |
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0006511 | ubiquitin-dependent protein catabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=79.054; coverage=28.627; evalue=2.57e-74; UniProt GO evidence=TAS:TIGR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006952 | defense response | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=79.054; coverage=28.627; evalue=2.57e-74; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009733 | response to auxin | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=79.054; coverage=28.627; evalue=2.57e-74; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009734 | auxin-activated signaling pathway | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=79.054; coverage=28.627; evalue=2.57e-74; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009873 | ethylene-activated signaling pathway | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=79.054; coverage=28.627; evalue=2.57e-74; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010152 | pollen maturation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=79.054; coverage=28.627; evalue=2.57e-74; UniProt GO evidence=IGI:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010311 | lateral root formation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=79.054; coverage=28.627; evalue=2.57e-74; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016036 | cellular response to phosphate starvation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=79.054; coverage=28.627; evalue=2.57e-74; UniProt GO evidence=IEP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016567 | protein ubiquitination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=79.054; coverage=28.627; evalue=2.57e-74; UniProt GO evidence=IEA:UniProtKB-UniPathway | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031146 | SCF-dependent proteasomal ubiquitin-dependent protein catabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=79.054; coverage=28.627; evalue=2.57e-74; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045014 | carbon catabolite repression of transcription by glucose | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=67.123; coverage=28.24; evalue=5.71e-57; UniProt GO evidence=TAS:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0048443 | stamen development | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=79.054; coverage=28.627; evalue=2.57e-74; UniProt GO evidence=IGI:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0048527 | lateral root development | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=62.5; coverage=27.853; evalue=1.69e-57; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071249 | cellular response to nitrate | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=62.5; coverage=27.853; evalue=1.69e-57; UniProt GO evidence=IEP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0080022 | primary root development | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=62.5; coverage=27.853; evalue=1.69e-57; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000151 | ubiquitin ligase complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=79.054; coverage=28.627; evalue=2.57e-74; UniProt GO evidence=IDA:TIGR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000325 | plant-type vacuole | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=62.5; coverage=27.853; evalue=1.7e-56; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=79.054; coverage=28.627; evalue=2.57e-74; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005737 | cytoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=79.054; coverage=28.627; evalue=2.57e-74; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0019005 | SCF ubiquitin ligase complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=79.054; coverage=28.627; evalue=2.57e-74; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0043224 | nuclear SCF ubiquitin ligase complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=67.123; coverage=28.24; evalue=5.71e-57; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000822 | inositol hexakisphosphate binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=79.054; coverage=28.627; evalue=2.57e-74; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0004842 | ubiquitin-protein transferase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=79.054; coverage=28.627; evalue=2.57e-74; UniProt GO evidence=IC:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010011 | auxin binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=79.054; coverage=28.627; evalue=2.57e-74; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0038198 | auxin receptor activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=79.054; coverage=28.627; evalue=2.57e-74; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT1G12820 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=62.5; coverage=27.853; evalue=1.69e-57 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT3G26810 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=62.5; coverage=27.853; evalue=1.7e-56 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT3G62980 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=79.054; coverage=28.627; evalue=2.57e-74 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT4G03190 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=67.123; coverage=28.24; evalue=5.71e-57 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | dosa:Os04g0395600 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=61.806; coverage=27.853; evalue=8.3e-51 | UniProtKB/Swiss-Prot DAT 2026 current_release |