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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_030979
Query referenceOH1004
LocationChr06:126178462-126180615 (+)
DescriptionSimilar to CCDA2: Cytochrome c-type biogenesis ccda-like chloroplastic protein 2 (Oryza sativa subsp. japonica OX%3D39947)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_030979 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 7 GO annotations and 3 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g54290 Required for the transfer of reducing equivalents from stroma to thylakoid lumen.
A homolog of prokaryotic thiol disulfide transporter CcdA is required for the assembly of the cytochrome b6f complex in Arabidopsis chloroplasts.2004 · DOI: 10.1074/jbc.m404285200
CcdA is a thylakoid membrane protein required for the transfer of reducing equivalents from stroma to thylakoid lumen in the higher plant chloroplast.2010 · DOI: 10.1089/ars.2010.3138

Rice

Reference gene IDPossible functionPapers / DOI
Os12g0137300 Probably involved in the transfer of reducing equivalents from stroma to thylakoid lumen and required for the biogenesis of the plastid cytochrome b6f complex. No verified direct reference in this release
Os11g0140800 Probably involved in the transfer of reducing equivalents from stroma to thylakoid lumen and required for the biogenesis of the plastid cytochrome b6f complex. No verified direct reference in this release

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0010190cytochrome b6f complex assemblyBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=77.741; coverage=96.474; evalue=1.99e-160; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0017004cytochrome complex assemblyBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=30.085; coverage=75.641; evalue=6.94e-34; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0045454cell redox homeostasisBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=77.741; coverage=96.474; evalue=1.99e-160; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009534chloroplast thylakoidCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=75.081; coverage=99.038; evalue=1.46e-145; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009535chloroplast thylakoid membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=77.741; coverage=96.474; evalue=1.99e-160; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0031969chloroplast membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=30.085; coverage=75.641; evalue=6.94e-34; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0055035plastid thylakoid membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=77.741; coverage=96.474; evalue=1.99e-160; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT5G54290KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=75.081; coverage=99.038; evalue=1.46e-145UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdosa:Os11g0140800KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=77.741; coverage=96.474; evalue=1.12e-159UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdosa:Os12g0137300KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=77.741; coverage=96.474; evalue=1.99e-160UniProtKB/Swiss-Prot DAT 2026 current_release