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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_030700
Query referenceOH1004
LocationChr06:121025438-121027504 (+)
DescriptionSimilar to PUB19: U-box domain-containing protein 19 (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_030700 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 18 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g60190 Functions as an E3 ubiquitin ligase. No verified direct reference in this release
At1g10560 Functions as an E3 ubiquitin ligase (By similarity).
The N-Terminal UND Motif of the Arabidopsis U-Box E3 Ligase PUB18 Is Critical for the Negative Regulation of ABA-Mediated Stomatal Movement and Determines Its Ubiquitination Specificity for Exocyst Subunit Exo70B1.2016 · DOI: 10.1105/tpc.16.00347
At1g29340 Functions as an E3 ubiquitin ligase.
The E3 ubiquitin ligase activity of arabidopsis PLANT U-BOX17 and its functional tobacco homolog ACRE276 are required for cell death and defense.2006 · DOI: 10.1105/tpc.105.039198

Rice

Reference gene IDPossible functionPapers / DOI
Os06g0102700 Possesses E3 ubiquitin-protein ligase in vitro. No verified direct reference in this release

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0002237response to molecule of bacterial originBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=32.081; coverage=100.581; evalue=1.52e-103; UniProt GO evidence=IEP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009609response to symbiotic bacteriumBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=32.081; coverage=100.581; evalue=1.52e-103; UniProt GO evidence=IEP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009610response to symbiotic fungusBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=32.081; coverage=100.581; evalue=1.52e-103; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009738abscisic acid-activated signaling pathwayBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=38.986; coverage=100.291; evalue=5.45e-157; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009787regulation of abscisic acid-activated signaling pathwayBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=38.986; coverage=100.291; evalue=5.45e-157; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009877nodulationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=32.081; coverage=100.581; evalue=1.52e-103; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010029regulation of seed germinationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.597; coverage=97.384; evalue=1.79e-161; UniProt GO evidence=IGI:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010119regulation of stomatal movementBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=38.986; coverage=100.291; evalue=5.45e-157; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016567protein ubiquitinationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.597; coverage=97.384; evalue=1.79e-161; UniProt GO evidence=IEA:UniProtKB-UniPathwayUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0036377arbuscular mycorrhizal associationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=32.081; coverage=100.581; evalue=1.52e-103; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0098542defense response to other organismBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=30.922; coverage=102.471; evalue=5.26e-87; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.597; coverage=97.384; evalue=1.79e-161; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005737cytoplasmCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.597; coverage=97.384; evalue=1.79e-161; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005886plasma membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=32.081; coverage=100.581; evalue=1.52e-103; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009507chloroplastCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.597; coverage=97.384; evalue=1.79e-161; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0012505endomembrane systemCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=38.986; coverage=100.291; evalue=5.45e-157; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0004842ubiquitin-protein transferase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=38.986; coverage=100.291; evalue=5.45e-157; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0061630ubiquitin protein ligase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.597; coverage=97.384; evalue=1.79e-161; UniProt GO evidence=IEA:UniProtKB-ECUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT1G10560KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=38.986; coverage=100.291; evalue=5.45e-157UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT1G29340KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=30.922; coverage=102.471; evalue=5.26e-87UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT1G60190KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.597; coverage=97.384; evalue=1.79e-161UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdosa:Os06g0102700KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=34.737; coverage=82.849; evalue=4.08e-84UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGmtr:11430446KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=32.081; coverage=100.581; evalue=1.52e-103UniProtKB/Swiss-Prot DAT 2026 current_release