Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`LXL04_030619`
Query reference	OH1004
Location	Chr06:119620512-119621755 (-)
Description	Similar to NAC100: NAC domain-containing protein 100 (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_030619 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 31 GO annotations and 6 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g61430`	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO.	No verified direct reference in this release
`At5g07680`	NAC domain-containing protein 79.	No verified direct reference in this release
`At5g39610`	Transcription activator that binds to DNA in promoters of target genes on a specific bipartite motif 5'-[ACG][CA]GT[AG](5-6n)[CT]AC[AG]-3'.	The delayed leaf senescence mutants of Arabidopsis, ore1, ore3, and ore9 are tolerant to oxidative stress.2004 · DOI: 10.1093/pcp/pch110 Trifurcate feed-forward regulation of age-dependent cell death involving miR164 in Arabidopsis.2009 · DOI: 10.1126/science.1166386 Forward and reverse genetics to identify genes involved in the age-related resistance response in Arabidopsis thaliana.2009 · DOI: 10.1111/j.1364-3703.2009.00557.x A gene regulatory network controlled by the NAC transcription factor ANAC092/AtNAC2/ORE1 during salt-promoted senescence.2010 · DOI: 10.1111/j.1365-313x.2010.04151.x ORS1, an H₂O₂-responsive NAC transcription factor, controls senescence in Arabidopsis thaliana.2011 · DOI: 10.1093/mp/ssq080 NAC transcription factor ORE1 and senescence-induced BIFUNCTIONAL NUCLEASE1 (BFN1) constitute a regulatory cascade in Arabidopsis.2013 · DOI: 10.1093/mp/sst012 ORE1 balances leaf senescence against maintenance by antagonizing G2-like-mediated transcription.2013 · DOI: 10.1038/embor.2013.24
`At3g29035`	Transcription activator that binds to DNA in promoters of target genes on a specific bipartite motif 5'-[AG]CGT[AG](4- 5n)[AG][CT]ACGCAA-3'.	ORS1, an H₂O₂-responsive NAC transcription factor, controls senescence in Arabidopsis thaliana.2011 · DOI: 10.1093/mp/ssq080

Rice

Reference gene ID	Possible function	Papers / DOI
`Os04g0460600`	Transcription factor involved in the regulation of tiller bud outgrowth, but does not seem to regulate tiller bud initiation.	Overexpression of a NAC-domain protein promotes shoot branching in rice.2007 · DOI: 10.1111/j.1469-8137.2007.02177.x OsNAC2 encoding a NAC transcription factor that affects plant height through mediating the gibberellic acid pathway in rice.2015 · DOI: 10.1111/tpj.12819 A Rice NAC Transcription Factor Promotes Leaf Senescence via ABA Biosynthesis.2017 · DOI: 10.1104/pp.17.00542 Overexpression of miR164b-resistant OsNAC2 improves plant architecture and grain yield in rice.2018 · DOI: 10.1093/jxb/ery017 OsNAC2 positively affects salt-induced cell death and binds to the OsAP37 and OsCOX11 promoters.2018 · DOI: 10.1111/tpj.13867 OsNAC2 integrates auxin and cytokinin pathways to modulate rice root development.2020 · DOI: 10.1111/pbi.13209 Overexpression of a microRNA-targeted NAC transcription factor improves drought and salt tolerance in Rice via ABA-mediated pathways.2019 · DOI: 10.1186/s12284-019-0334-6 OsNAC2 Is Involved in Multiple Hormonal Pathways to Mediate Germination of Rice Seeds and Establishment of Seedling.2021 · DOI: 10.3389/fpls.2021.699303

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0006351	DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.224; coverage=100.57; evalue=1.49e-130; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006355	regulation of DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=47.126; coverage=99.145; evalue=2.72e-90; UniProt GO evidence=IEA:InterPro	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006979	response to oxidative stress	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=65.138; coverage=62.108; evalue=3.68e-94; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009611	response to wounding	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=46.041; coverage=97.151; evalue=7.63e-90; UniProt GO evidence=IEP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009651	response to salt stress	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=65.138; coverage=62.108; evalue=3.68e-94; UniProt GO evidence=IEP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009723	response to ethylene	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=65.138; coverage=62.108; evalue=3.68e-94; UniProt GO evidence=IEP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009733	response to auxin	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=65.138; coverage=62.108; evalue=3.68e-94; UniProt GO evidence=IEP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009734	auxin-activated signaling pathway	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=47.126; coverage=99.145; evalue=2.72e-90; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009737	response to abscisic acid	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=65.138; coverage=62.108; evalue=3.68e-94; UniProt GO evidence=IEP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009738	abscisic acid-activated signaling pathway	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=47.126; coverage=99.145; evalue=2.72e-90; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009740	gibberellic acid mediated signaling pathway	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=47.126; coverage=99.145; evalue=2.72e-90; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009873	ethylene-activated signaling pathway	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=47.126; coverage=99.145; evalue=2.72e-90; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010029	regulation of seed germination	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=65.138; coverage=62.108; evalue=3.68e-94; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010150	leaf senescence	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=65.138; coverage=62.108; evalue=3.68e-94; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010468	regulation of gene expression	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=65.138; coverage=62.108; evalue=3.68e-94; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0042542	response to hydrogen peroxide	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=65.138; coverage=62.108; evalue=3.68e-94; UniProt GO evidence=IEP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0043068	positive regulation of programmed cell death	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=65.138; coverage=62.108; evalue=3.68e-94; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0045893	positive regulation of DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=65.138; coverage=62.108; evalue=3.68e-94; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0048527	lateral root development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=65.138; coverage=62.108; evalue=3.68e-94; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0080187	floral organ senescence	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=65.138; coverage=62.108; evalue=3.68e-94; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0090400	stress-induced premature senescence	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=65.138; coverage=62.108; evalue=3.68e-94; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:1900057	positive regulation of leaf senescence	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=65.138; coverage=62.108; evalue=3.68e-94; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:1902074	response to salt	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=65.138; coverage=62.108; evalue=3.68e-94; UniProt GO evidence=IEP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:1904250	positive regulation of age-related resistance	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=65.138; coverage=62.108; evalue=3.68e-94; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:1990641	response to iron ion starvation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.224; coverage=100.57; evalue=1.49e-130; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.224; coverage=100.57; evalue=1.49e-130; UniProt GO evidence=ISM:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000976	transcription cis-regulatory region binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.224; coverage=100.57; evalue=1.49e-130; UniProt GO evidence=IEA:UniProtKB-ARBA	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003677	DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=47.126; coverage=99.145; evalue=2.72e-90; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003700	DNA-binding transcription factor activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.224; coverage=100.57; evalue=1.49e-130; UniProt GO evidence=ISS:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0042803	protein homodimerization activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=65.138; coverage=62.108; evalue=3.68e-94; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0043565	sequence-specific DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=65.138; coverage=62.108; evalue=3.68e-94; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT3G29035	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=46.041; coverage=97.151; evalue=7.63e-90	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT5G07680	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=54.722; coverage=102.564; evalue=3.99e-120	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT5G39610	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=65.138; coverage=62.108; evalue=3.68e-94	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT5G61430	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.224; coverage=100.57; evalue=1.49e-130	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	dosa:Os04g0460600	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=47.126; coverage=99.145; evalue=2.72e-90	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	osa:4336052	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=47.126; coverage=99.145; evalue=2.72e-90	UniProtKB/Swiss-Prot DAT 2026 current_release