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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_030101
Query referenceOH1004
LocationChr06:108191975-108199896 (-)
DescriptionSimilar to TAF1: Transcription initiation factor TFIID subunit 1 (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_030101 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 8 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g32750 TAFs are components of the transcription factor IID (TFIID) complex that is essential for mediating regulation of RNA polymerase transcription. No verified direct reference in this release
At3g19040 TAFs are components of the transcription factor IID (TFIID) complex that is essential for mediating regulation of RNA polymerase transcription.
Arabidopsis HAF2 gene encoding TATA-binding protein (TBP)-associated factor TAF1, is required to integrate light signals to regulate gene expression and growth.2005 · DOI: 10.1074/jbc.m409000200
Arabidopsis GCN5, HD1, and TAF1/HAF2 interact to regulate histone acetylation required for light-responsive gene expression.2006 · DOI: 10.1105/tpc.106.043489

Rice

Reference gene IDPossible functionPapers / DOI
Os06g0645700 Largest component and core scaffold of the TFIID basal transcription factor complex. No verified direct reference in this release

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0009294DNA-mediated transformationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=50.077; coverage=106.487; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009416response to light stimulusBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=44.806; coverage=103.189; evalue=0.0; UniProt GO evidence=IEP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0051123RNA polymerase II preinitiation complex assemblyBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=50.077; coverage=106.487; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=50.077; coverage=106.487; evalue=0.0; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005669transcription factor TFIID complexCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=50.077; coverage=106.487; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0004402histone acetyltransferase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=50.077; coverage=106.487; evalue=0.0; UniProt GO evidence=IEA:InterProUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016251RNA polymerase II general transcription initiation factor activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=50.077; coverage=106.487; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0017025TBP-class protein bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=50.077; coverage=106.487; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT1G32750KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=50.077; coverage=106.487; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT3G19040KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=44.806; coverage=103.189; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGddi:DDB_G0292242KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=39.111; coverage=24.739; evalue=1.01e-82UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGosa:9266475KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=49.758; coverage=102.199; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release