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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_029939
Query referenceOH1004
LocationChr06:103649313-103651689 (-)
DescriptionSimilar to SGRL: Magnesium dechelatase SGRL%2C chloroplastic (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_029939 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 9 GO annotations and 3 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g44000 Magnesium chelatase involved in chlorophyll a degradation in the chlorophyll-protein complexes of photosystem I (PSI) and photosystem II (PSII).
Arabidopsis STAYGREEN-LIKE (SGRL) promotes abiotic stress-induced leaf yellowing during vegetative growth.2014 · DOI: 10.1016/j.febslet.2014.09.018
Arabidopsis STAY-GREEN , Mendel's Green Cotyledon Gene, Encodes Magnesium-Dechelatase.2016 · DOI: 10.1105/tpc.16.00428

Rice

Reference gene IDPossible functionPapers / DOI
UniProt: A2Z3E5 Involved in the disassembling mechanism of the intact light-harvesting complex of photosystem II (LHCPII) in the thylakoid membranes. No verified direct reference in this release
Os09g0532000 Involved in the disassembling mechanism of the intact light-harvesting complex of photosystem II (LHCII) in the thylakoid membranes. No verified direct reference in this release

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0009658chloroplast organizationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.274; coverage=92.857; evalue=3.8e-76; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010271regulation of chlorophyll catabolic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=48.851; coverage=69.048; evalue=5.23e-53; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0015996chlorophyll catabolic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.274; coverage=92.857; evalue=3.8e-76; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005739mitochondrionCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.274; coverage=92.857; evalue=3.8e-76; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009507chloroplastCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=55.488; coverage=65.079; evalue=1.59e-54; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009534chloroplast thylakoidCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.274; coverage=92.857; evalue=3.8e-76; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009570chloroplast stromaCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=55.488; coverage=65.079; evalue=1.62e-54; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0031969chloroplast membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=55.488; coverage=65.079; evalue=1.62e-54; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016829lyase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.274; coverage=92.857; evalue=3.8e-76; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT1G44000KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.274; coverage=92.857; evalue=3.8e-76UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGcann:107866321KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=47.895; coverage=75.397; evalue=8.83e-54UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdosa:Os09g0532000KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=55.488; coverage=65.079; evalue=1.62e-54UniProtKB/Swiss-Prot DAT 2026 current_release