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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_029931
Query referenceOH1004
LocationChr06:103544449-103545833 (+)
DescriptionSimilar to Os08g0135800: Zinc finger CCCH domain-containing protein 55 (Oryza sativa subsp. japonica OX%3D39947)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_029931 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 6 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g18640 Zinc finger CCCH domain-containing protein 38. No verified direct reference in this release
At2g33835 Transcriptional activator involved in the FRIGIDA-mediated vernalization pathway, but not in the autonomous flowering pathway.
FRIGIDA-ESSENTIAL 1 interacts genetically with FRIGIDA and FRIGIDA-LIKE 1 to promote the winter-annual habit of Arabidopsis thaliana.2005 · DOI: 10.1242/dev.02170
The FRIGIDA complex activates transcription of FLC, a strong flowering repressor in Arabidopsis, by recruiting chromatin modification factors.2011 · DOI: 10.1105/tpc.110.075911

Rice

Reference gene IDPossible functionPapers / DOI
Os08g0135800 Zinc finger CCCH domain-containing protein 55. No verified direct reference in this release
Os05g0497500 Zinc finger CCCH domain-containing protein 36. No verified direct reference in this release

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0009908flower developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=46.429; coverage=20.948; evalue=1.93e-17; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010220positive regulation of vernalization responseBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=46.429; coverage=20.948; evalue=1.93e-17; UniProt GO evidence=IGI:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0030154cell differentiationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=46.429; coverage=20.948; evalue=1.93e-17; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=45.27; coverage=36.908; evalue=5.61e-27; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003677DNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.506; coverage=38.404; evalue=1.12e-27; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0008270zinc ion bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.506; coverage=38.404; evalue=1.12e-27; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT2G33835KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=46.429; coverage=20.948; evalue=1.93e-17UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT3G18640KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=45.27; coverage=36.908; evalue=5.61e-27UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdosa:Os05g0497500KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=49.333; coverage=18.703; evalue=5.87e-15UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdosa:Os08g0135800KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.506; coverage=38.404; evalue=1.12e-27UniProtKB/Swiss-Prot DAT 2026 current_release