Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_029917 |
|---|---|
| Query reference | OH1004 |
| Location | Chr06:103326002-103327112 (-) |
| Description | Similar to PPD4: PsbP domain-containing protein 4%2C chloroplastic (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_029917 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 14 GO annotations and 3 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At1g77090 |
PsbP domain-containing protein 4, chloroplastic. | No verified direct reference in this release |
At3g56650 |
May be involved in the redox regulation of photosystem II. | No verified direct reference in this release |
At3g63540 |
Thylakoid lumenal 19 kDa protein, chloroplastic. | No verified direct reference in this release |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0048564 | photosystem I assembly | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.889; coverage=88.235; evalue=1.21e-120; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=30.464; coverage=59.216; evalue=3.77e-10; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005739 | mitochondrion | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.889; coverage=88.235; evalue=1.21e-120; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005829 | cytosol | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.889; coverage=88.235; evalue=1.21e-120; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009507 | chloroplast | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.889; coverage=88.235; evalue=1.21e-120; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009534 | chloroplast thylakoid | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.889; coverage=88.235; evalue=1.21e-120; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009535 | chloroplast thylakoid membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.889; coverage=88.235; evalue=1.21e-120; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009543 | chloroplast thylakoid lumen | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.889; coverage=88.235; evalue=1.21e-120; UniProt GO evidence=HDA:TIGR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009570 | chloroplast stroma | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.889; coverage=88.235; evalue=1.21e-120; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009579 | thylakoid | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.889; coverage=88.235; evalue=1.21e-120; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009654 | photosystem II oxygen evolving complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.889; coverage=88.235; evalue=1.21e-120; UniProt GO evidence=IEA:InterPro | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0019898 | extrinsic component of membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.889; coverage=88.235; evalue=1.21e-120; UniProt GO evidence=IEA:InterPro | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031977 | thylakoid lumen | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.889; coverage=88.235; evalue=1.21e-120; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005509 | calcium ion binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.889; coverage=88.235; evalue=1.21e-120; UniProt GO evidence=IEA:InterPro | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT1G77090 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.889; coverage=88.235; evalue=1.21e-120 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT3G56650 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=32.927; coverage=64.314; evalue=2.22e-18 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT3G63540 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=30.464; coverage=59.216; evalue=3.77e-10 | UniProtKB/Swiss-Prot DAT 2026 current_release |