Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_029820 |
|---|---|
| Query reference | OH1004 |
| Location | Chr06:101174630-101180651 (+) |
| Description | Similar to ISPH: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase%2C chloroplastic (Oryza sativa subsp. japonica OX%3D39947) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_029820 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 10 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At4g34350 |
Enzyme of the plastid non-mevalonate pathway for isoprenoid biosynthesis that converts 1-hydroxy-2-methyl-2-(E)-butenyl 4- diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). |
Rice
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
Os03g0731900 |
Enzyme of the plastid non-mevalonate pathway for isoprenoid biosynthesis that converts 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). | No verified direct reference in this release |
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0016114 | terpenoid biosynthetic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=61.905; coverage=27.155; evalue=9.96e-17; UniProt GO evidence=IEA:UniProtKB-UniRule | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0019288 | isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=50.0; coverage=40.517; evalue=3.44e-20; UniProt GO evidence=IEA:InterPro | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0050992 | dimethylallyl diphosphate biosynthetic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=50.0; coverage=40.517; evalue=3.44e-20; UniProt GO evidence=IEA:InterPro | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005886 | plasma membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=48.936; coverage=40.517; evalue=6.57e-19; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009507 | chloroplast | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=48.936; coverage=40.517; evalue=6.57e-19; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009570 | chloroplast stroma | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=50.0; coverage=40.517; evalue=3.44e-20; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0046429 | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity (ferredoxin) | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=48.936; coverage=40.517; evalue=6.57e-19; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0046872 | metal ion binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=50.0; coverage=40.517; evalue=3.44e-20; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0051539 | 4 iron, 4 sulfur cluster binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=50.0; coverage=40.517; evalue=3.44e-20; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0051745 | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=50.0; coverage=40.517; evalue=3.44e-20; UniProt GO evidence=IEA:UniProtKB-EC | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ana:all0985 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=45.361; coverage=41.81; evalue=1.12e-16 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT4G34350 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=48.936; coverage=40.517; evalue=6.57e-19 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | dosa:Os03g0731900 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=53.659; coverage=35.345; evalue=5.49e-19 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | npu:Npun_R3286 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=61.905; coverage=27.155; evalue=9.96e-17 | UniProtKB/Swiss-Prot DAT 2026 current_release |