Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`LXL04_029237`
Query reference	OH1004
Location	Chr06:84621569-84623092 (+)
Description	Similar to GRF3: Growth-regulating factor 3 (Oryza sativa subsp. japonica OX%3D39947)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_029237 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 11 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g13960`	Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues.	The transcription factor AtGRF5 and the transcription coactivator AN3 regulate cell proliferation in leaf primordia of Arabidopsis thaliana.2005 · DOI: 10.1111/j.1365-313x.2005.02429.x

Rice

Reference gene ID	Possible function	Papers / DOI
`Os04g0600900`	Transcription activator that plays a regulatory role in gibberellin-induced stem elongation.	No verified direct reference in this release
`Os02g0701300`	Transcription activator that plays a role in the regulation of meristematic function in leaves, stems and inflorescences.	Interaction between the GROWTH-REGULATING FACTOR and KNOTTED1-LIKE HOMEOBOX families of transcription factors.2014 · DOI: 10.1104/pp.113.222836 A Rare Allele of GS2 Enhances Grain Size and Grain Yield in Rice.2015 · DOI: 10.1016/j.molp.2015.07.002 OsGRF4 controls grain shape, panicle length and seed shattering in rice.2016 · DOI: 10.1111/jipb.12473 The OsmiR396c-OsGRF4-OsGIF1 regulatory module determines grain size and yield in rice.2016 · DOI: 10.1111/pbi.12569 Control of grain size and rice yield by GL2-mediated brassinosteroid responses.2015 · DOI: 10.1038/nplants.2015.195 Regulation of OsGRF4 by OsmiR396 controls grain size and yield in rice.2015 · DOI: 10.1038/nplants.2015.203
`Os06g0116200`	Transcription activator that plays a regulatory role in gibberellin-induced stem elongation.	No verified direct reference in this release
`Os02g0776900`	Transcription activator that plays a regulatory role in gibberellin-induced stem elongation.	No verified direct reference in this release

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0006351	DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.771; coverage=108.683; evalue=6.28e-74; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006355	regulation of DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.771; coverage=108.683; evalue=6.28e-74; UniProt GO evidence=IEA:InterPro	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0008283	cell population proliferation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=42.857; coverage=102.695; evalue=1.89e-73; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009409	response to cold	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=64.463; coverage=36.228; evalue=4.39e-48; UniProt GO evidence=IEP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009739	response to gibberellin	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=64.463; coverage=36.228; evalue=4.39e-48; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0032502	developmental process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.771; coverage=108.683; evalue=6.28e-74; UniProt GO evidence=IEA:InterPro	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0045893	positive regulation of DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=42.857; coverage=102.695; evalue=1.89e-73; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0048316	seed development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=42.857; coverage=102.695; evalue=1.89e-73; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0048366	leaf development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=42.857; coverage=102.695; evalue=1.89e-73; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.771; coverage=108.683; evalue=6.28e-74; UniProt GO evidence=IEA:UniProtKB-SubCell	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005524	ATP binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.771; coverage=108.683; evalue=6.28e-74; UniProt GO evidence=IEA:InterPro	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT3G13960	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=64.463; coverage=36.228; evalue=4.39e-48	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	dosa:Os02g0701300	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=42.857; coverage=102.695; evalue=1.89e-73	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	dosa:Os02g0776900	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=63.248; coverage=35.03; evalue=1.75e-43	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	dosa:Os04g0600900	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.771; coverage=108.683; evalue=6.28e-74	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	dosa:Os06g0116200	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=39.437; coverage=106.287; evalue=4.73e-64	UniProtKB/Swiss-Prot DAT 2026 current_release