Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`LXL04_028825`
Query reference	OH1004
Location	Chr06:67397920-67407665 (-)
Description	Similar to RE1: Retrovirus-related Pol polyprotein from transposon RE1 (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_028825 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 38 GO annotations and 1 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`UniProt: Q94HW2`	Retrovirus-related Pol polyprotein from transposon RE1.	No verified direct reference in this release
`At4g02960`	Retrovirus-related Pol polyprotein from transposon RE2.	No verified direct reference in this release
`At1g08720`	MAPKKK serine/threonine-protein kinase involved in the regulation of a MAP kinase cascade (probably including MPK3 and MPK6) that negatively regulates salicylic acid- (SA-) dependent defense responses, abscisic acid (ABA) signaling, and ethylene-induced senescence.	Negative regulation of defense responses in plants by a conserved MAPKK kinase.2001 · DOI: 10.1073/pnas.98.1.373 Overexpression of a kinase-deficient form of the EDR1 gene enhances powdery mildew resistance and ethylene-induced senescence in Arabidopsis.2002 · DOI: 10.1046/j.1365-313x.2002.01482.x Regulation of plant disease resistance, stress responses, cell death, and ethylene signaling in Arabidopsis by the EDR1 protein kinase.2005 · DOI: 10.1104/pp.105.060400 Costs and benefits of priming for defense in Arabidopsis.2006 · DOI: 10.1073/pnas.0510213103 Powdery mildew resistance conferred by loss of the ENHANCED DISEASE RESISTANCE1 protein kinase is suppressed by a missense mutation in KEEP ON GOING, a regulator of abscisic acid signaling.2008 · DOI: 10.1104/pp.108.127605 Mitogen-activated protein kinases 3 and 6 are required for full priming of stress responses in Arabidopsis thaliana.2009 · DOI: 10.1105/tpc.108.062158 The KEEP ON GOING protein of Arabidopsis recruits the ENHANCED DISEASE RESISTANCE1 protein to trans-Golgi network/early endosome vesicles.2011 · DOI: 10.1104/pp.110.171785 Arabidopsis ENHANCED DISEASE RESISTANCE 1 is required for pathogen-induced expression of plant defensins in nonhost resistance, and acts through interference of MYC2-mediated repressor function.2011 · DOI: 10.1111/j.1365-313x.2011.04651.x Negative regulation of defence signalling pathways by the EDR1 protein kinase.2011 · DOI: 10.1111/j.1364-3703.2011.00708.x An Arabidopsis mutant with enhanced resistance to powdery mildew.1998 · DOI: 10.1105/tpc.10.6.947
`At1g73660`	Acts as a negative regulator of salt tolerance.	The genetic locus At1g73660 encodes a putative MAPKKK and negatively regulates salt tolerance in Arabidopsis.2008 · DOI: 10.1007/s11103-008-9306-8 SIS8, a putative mitogen-activated protein kinase kinase kinase, regulates sugar-resistant seedling development in Arabidopsis.2014 · DOI: 10.1111/tpj.12404
`At5g03730`	Acts as a negative regulator in the ethylene response pathway.	CTR1 phosphorylates the central regulator EIN2 to control ethylene hormone signaling from the ER membrane to the nucleus in Arabidopsis.2012 · DOI: 10.1073/pnas.1214848109 Unsaturation of very-long-chain ceramides protects plant from hypoxia-induced damages by modulating ethylene signaling in Arabidopsis.2015 · DOI: 10.1371/journal.pgen.1005143 CTR1, a negative regulator of the ethylene response pathway in Arabidopsis, encodes a member of the raf family of protein kinases.1993 · DOI: 10.1016/0092-8674(93)90119-b

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0000165	MAPK cascade	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=68.116; coverage=18.134; evalue=2.03e-116; UniProt GO evidence=ISS:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0002229	defense response to oomycetes	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=68.116; coverage=18.134; evalue=2.03e-116; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006310	DNA recombination	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=42.828; coverage=32.523; evalue=1.66e-117; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006508	proteolysis	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=42.828; coverage=32.523; evalue=1.66e-117; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0007165	signal transduction	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=68.116; coverage=18.134; evalue=2.03e-116; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009414	response to water deprivation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=68.116; coverage=18.134; evalue=2.03e-116; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009617	response to bacterium	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=68.116; coverage=18.134; evalue=2.03e-116; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009620	response to fungus	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=68.116; coverage=18.134; evalue=2.03e-116; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009723	response to ethylene	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=68.116; coverage=18.134; evalue=2.03e-116; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009738	abscisic acid-activated signaling pathway	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=68.116; coverage=18.134; evalue=2.03e-116; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009788	negative regulation of abscisic acid-activated signaling pathway	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=68.116; coverage=18.134; evalue=2.03e-116; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009873	ethylene-activated signaling pathway	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=68.116; coverage=18.134; evalue=2.03e-116; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0012501	programmed cell death	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=68.116; coverage=18.134; evalue=2.03e-116; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0015074	DNA integration	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=42.828; coverage=32.523; evalue=1.66e-117; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0046777	protein autophosphorylation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=68.116; coverage=18.134; evalue=2.03e-116; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:1900150	regulation of defense response to fungus	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=68.116; coverage=18.134; evalue=2.03e-116; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:1900424	regulation of defense response to bacterium	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=68.116; coverage=18.134; evalue=2.03e-116; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:2000031	regulation of salicylic acid mediated signaling pathway	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=68.116; coverage=18.134; evalue=2.03e-116; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=68.116; coverage=18.134; evalue=2.03e-116; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005737	cytoplasm	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=68.116; coverage=18.134; evalue=2.03e-116; UniProt GO evidence=ISM:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005768	endosome	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=68.116; coverage=18.134; evalue=2.03e-116; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005769	early endosome	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=68.116; coverage=18.134; evalue=2.03e-116; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005783	endoplasmic reticulum	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=68.116; coverage=18.134; evalue=2.03e-116; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005802	trans-Golgi network	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=68.116; coverage=18.134; evalue=2.03e-116; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005829	cytosol	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=68.116; coverage=18.134; evalue=2.03e-116; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005886	plasma membrane	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=68.116; coverage=18.134; evalue=2.03e-116; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0012510	trans-Golgi network transport vesicle membrane	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=68.116; coverage=18.134; evalue=2.03e-116; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003676	nucleic acid binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=42.828; coverage=32.523; evalue=1.66e-117; UniProt GO evidence=IEA:InterPro	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003964	RNA-directed DNA polymerase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=42.828; coverage=32.523; evalue=1.66e-117; UniProt GO evidence=IEA:UniProtKB-EC	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0004190	aspartic-type endopeptidase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=42.828; coverage=32.523; evalue=1.66e-117; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0004519	endonuclease activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=42.828; coverage=32.523; evalue=1.66e-117; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0004672	protein kinase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=68.116; coverage=18.134; evalue=2.03e-116; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0004709	MAP kinase kinase kinase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=68.116; coverage=18.134; evalue=2.03e-116; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0004712	protein serine/threonine/tyrosine kinase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=68.116; coverage=18.134; evalue=2.03e-116; UniProt GO evidence=ISS:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005524	ATP binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=68.116; coverage=18.134; evalue=2.03e-116; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0008270	zinc ion binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=42.828; coverage=32.523; evalue=1.66e-117; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0016301	kinase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=68.116; coverage=18.134; evalue=2.03e-116; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0106310	protein serine kinase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=68.116; coverage=18.134; evalue=2.03e-116; UniProt GO evidence=IEA:RHEA	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G08720	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=68.116; coverage=18.134; evalue=2.03e-116	UniProtKB/Swiss-Prot DAT 2026 current_release