Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`LXL04_028444`
Query reference	OH1004
Location	Chr06:41953547-41960971 (-)
Description	Similar to HMA2: Cadmium/zinc-transporting ATPase HMA2 (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_028444 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 20 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g30110`	Plays an important role in zinc transport and homeostasis.	P-type ATPase heavy metal transporters with roles in essential zinc homeostasis in Arabidopsis.2004 · DOI: 10.1105/tpc.020487
`At2g19110`	Involved in cadmium/zinc transport.	No verified direct reference in this release
`UniProt: P0CW78`	In a heterologous system, involved in cadmium and lead transport, but not in zinc transport.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os06g0700700`	Zinc/cadmium transporter that plays an essential role in promoting translocation of zinc and cadmium from roots to shoots.	Cadmium retention in rice roots is influenced by cadmium availability, chelation and translocation.2011 · DOI: 10.1111/j.1365-3040.2011.02299.x Mutations in rice (Oryza sativa) heavy metal ATPase 2 (OsHMA2) restrict the translocation of zinc and cadmium.2012 · DOI: 10.1093/pcp/pcr166 The OsHMA2 transporter is involved in root-to-shoot translocation of Zn and Cd in rice.2012 · DOI: 10.1111/j.1365-3040.2012.02527.x Preferential delivery of zinc to developing tissues in rice is mediated by P-type heavy metal ATPase OsHMA2.2013 · DOI: 10.1104/pp.113.216564
`Os07g0232900`	Root-specific cadmium (Cd) transporter that mediates Cd efflux in root vacuoles.	Gene limiting cadmium accumulation in rice.2010 · DOI: 10.1073/pnas.1005396107 OsHMA3, a P1B-type of ATPase affects root-to-shoot cadmium translocation in rice by mediating efflux into vacuoles.2011 · DOI: 10.1111/j.1469-8137.2010.03459.x Overexpression of OsHMA3 enhances Cd tolerance and expression of Zn transporter genes in rice.2014 · DOI: 10.1093/jxb/eru340

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0006829	zinc ion transport	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=60.826; coverage=84.283; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006882	intracellular zinc ion homeostasis	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.067; coverage=103.059; evalue=0.0; UniProt GO evidence=IGI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010038	response to metal ion	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=60.826; coverage=84.283; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010043	response to zinc ion	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=60.826; coverage=84.283; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0015691	cadmium ion transport	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=60.826; coverage=84.283; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0030001	metal ion transport	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=60.826; coverage=84.283; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0032025	response to cobalt ion	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=60.826; coverage=84.283; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0046686	response to cadmium ion	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=60.826; coverage=84.283; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0055085	transmembrane transport	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.067; coverage=103.059; evalue=0.0; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0071585	detoxification of cadmium ion	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=62.034; coverage=73.629; evalue=0.0; UniProt GO evidence=IMP:CACAO	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005774	vacuolar membrane	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=62.034; coverage=73.629; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-SubCell	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005886	plasma membrane	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.067; coverage=103.059; evalue=0.0; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009506	plasmodesma	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=60.826; coverage=84.283; evalue=0.0; UniProt GO evidence=HDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0016020	membrane	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.067; coverage=103.059; evalue=0.0; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005524	ATP binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.067; coverage=103.059; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0008551	P-type cadmium transporter activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.067; coverage=103.059; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-EC	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0016463	P-type zinc transporter activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.067; coverage=103.059; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-EC	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0016887	ATP hydrolysis activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.067; coverage=103.059; evalue=0.0; UniProt GO evidence=IEA:InterPro	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0022857	transmembrane transporter activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.067; coverage=103.059; evalue=0.0; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0046872	metal ion binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.067; coverage=103.059; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT2G19110	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=60.826; coverage=84.283; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT4G30110	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.067; coverage=103.059; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	dosa:Os06g0700650	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=61.623; coverage=76.688; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	dosa:Os07g0232900	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=56.377; coverage=72.785; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	osa:4342783	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=56.377; coverage=72.785; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release