Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_028397 |
|---|---|
| Query reference | OH1004 |
| Location | Chr06:40461648-40467108 (+) |
| Description | Similar to TT9: Protein TRANSPARENT TESTA 9 (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_028397 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 32 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At3g28430 |
Involved in membrane trafficking and vacuole development through membrane fusion at the vacuole. |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0000423 | mitophagy | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=36.89; coverage=39.234; evalue=1.76e-56; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0001708 | cell fate specification | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.692; coverage=101.316; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006914 | autophagy | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=38.024; coverage=39.952; evalue=1.06e-64; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0007034 | vacuolar transport | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.692; coverage=101.316; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008333 | endosome to lysosome transport | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=39.322; coverage=35.287; evalue=2.73e-57; UniProt GO evidence=IMP:FlyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009267 | cellular response to starvation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=36.89; coverage=39.234; evalue=1.76e-56; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009718 | anthocyanin-containing compound biosynthetic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.692; coverage=101.316; evalue=0.0; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016192 | vesicle-mediated transport | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.692; coverage=101.316; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016197 | endosomal transport | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.692; coverage=101.316; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031648 | protein destabilization | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=36.89; coverage=39.234; evalue=1.76e-56; UniProt GO evidence=IMP:DisProt | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0032434 | regulation of proteasomal ubiquitin-dependent protein catabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=36.89; coverage=39.234; evalue=1.76e-56; UniProt GO evidence=IPI:DisProt | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0032435 | negative regulation of proteasomal ubiquitin-dependent protein catabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=36.89; coverage=39.234; evalue=1.76e-56; UniProt GO evidence=IMP:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0044090 | positive regulation of vacuole organization | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.692; coverage=101.316; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1901096 | regulation of autophagosome maturation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.692; coverage=101.316; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1901097 | negative regulation of autophagosome maturation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=36.89; coverage=39.234; evalue=1.76e-56; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1901098 | positive regulation of autophagosome maturation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=36.89; coverage=39.234; evalue=1.76e-56; UniProt GO evidence=IMP:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1901525 | negative regulation of mitophagy | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=36.89; coverage=39.234; evalue=1.76e-56; UniProt GO evidence=IMP:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1903415 | flavonoid transport from endoplasmic reticulum to plant-type vacuole | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.692; coverage=101.316; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1904263 | positive regulation of TORC1 signaling | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=36.89; coverage=39.234; evalue=1.76e-56; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000139 | Golgi membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.692; coverage=101.316; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000421 | autophagosome membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=39.322; coverage=35.287; evalue=2.73e-57; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005765 | lysosomal membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=36.89; coverage=39.234; evalue=1.79e-56; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005770 | late endosome | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=39.322; coverage=35.287; evalue=2.73e-57; UniProt GO evidence=IDA:FlyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005794 | Golgi apparatus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=38.024; coverage=39.952; evalue=1.06e-64; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005829 | cytosol | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=36.89; coverage=39.234; evalue=1.76e-56; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010008 | endosome membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=36.89; coverage=39.234; evalue=1.79e-56; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016020 | membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=39.322; coverage=35.287; evalue=2.73e-57; UniProt GO evidence=IDA:FlyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0019898 | extrinsic component of membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.692; coverage=101.316; evalue=0.0; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031902 | late endosome membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=39.322; coverage=35.287; evalue=2.73e-57; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031982 | vesicle | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=36.89; coverage=39.234; evalue=1.76e-56; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0036020 | endolysosome membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=36.89; coverage=39.234; evalue=1.76e-56; UniProt GO evidence=IDA:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031267 | small GTPase binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=39.322; coverage=35.287; evalue=2.73e-57; UniProt GO evidence=IPI:FlyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT3G28430 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.692; coverage=101.316; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ddi:DDB_G0289943 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=38.024; coverage=39.952; evalue=1.06e-64 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | dme:Dmel_CG12753 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=39.322; coverage=35.287; evalue=2.73e-57 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | hsa:23274 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=36.89; coverage=39.234; evalue=1.79e-56 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | mmu:74374 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=36.89; coverage=39.234; evalue=1.76e-56 | UniProtKB/Swiss-Prot DAT 2026 current_release |