Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`LXL04_028378`
Query reference	OH1004
Location	Chr06:39417869-39420516 (-)
Description	Similar to ADO1: Adagio protein 1 (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_028378 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 16 GO annotations and 3 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g57360`	Component of an E3 ubiquitin ligase complex that plays a central role in blue light-dependent circadian cycles.	LKP1 (LOV kelch protein 1): a factor involved in the regulation of flowering time in arabidopsis.2000 · DOI: 10.1046/j.1365-313x.2000.00850.x An Arabidopsis circadian clock component interacts with both CRY1 and phyB.2001 · DOI: 10.1038/35068589 LOV KELCH PROTEIN2 and ZEITLUPE repress Arabidopsis photoperiodic flowering under non-inductive conditions, dependent on FLAVIN-BINDING KELCH REPEAT F-BOX1.2011 · DOI: 10.1111/j.1365-313x.2011.04618.x
`At2g18915`	Component of an E3 ubiquitin ligase complex that plays a central role in blue light-dependent circadian cycles.	A role for LKP2 in the circadian clock of Arabidopsis.2001 · DOI: 10.1105/tpc.010332 LOV KELCH PROTEIN2 and ZEITLUPE repress Arabidopsis photoperiodic flowering under non-inductive conditions, dependent on FLAVIN-BINDING KELCH REPEAT F-BOX1.2011 · DOI: 10.1111/j.1365-313x.2011.04618.x
`At1g68050`	Component of an E3 ubiquitin ligase complex that plays a central role in blue light-dependent circadian cycles.	FKF1, a clock-controlled gene that regulates the transition to flowering in Arabidopsis.2000 · DOI: 10.1016/s0092-8674(00)80842-9 Functional conservation of light, oxygen, or voltage domains in light sensing.2003 · DOI: 10.1073/pnas.1031791100 FKF1 is essential for photoperiodic-specific light signalling in Arabidopsis.2003 · DOI: 10.1038/nature02090 FKF1 F-box protein mediates cyclic degradation of a repressor of CONSTANS in Arabidopsis.2005 · DOI: 10.1126/science.1110586 FKF1 and GIGANTEA complex formation is required for day-length measurement in Arabidopsis.2007 · DOI: 10.1126/science.1146994 Arabidopsis DOF transcription factors act redundantly to reduce CONSTANS expression and are essential for a photoperiodic flowering response.2009 · DOI: 10.1016/j.devcel.2009.06.015 LOV KELCH PROTEIN2 and ZEITLUPE repress Arabidopsis photoperiodic flowering under non-inductive conditions, dependent on FLAVIN-BINDING KELCH REPEAT F-BOX1.2011 · DOI: 10.1111/j.1365-313x.2011.04618.x FKF1 conveys timing information for CONSTANS stabilization in photoperiodic flowering.2012 · DOI: 10.1126/science.1219644

Rice

Reference gene ID	Possible function	Papers / DOI
`Os06g0694000`	Component of an E3 ubiquitin ligase complex that plays a central role in blue light-dependent circadian cycles.	No verified direct reference in this release
`Os02g0150800`	Component of an E3 ubiquitin ligase complex that plays a central role in blue light-dependent circadian cycles.	No verified direct reference in this release

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0006511	ubiquitin-dependent protein catabolic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=81.24; coverage=100.657; evalue=0.0; UniProt GO evidence=TAS:TIGR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0007623	circadian rhythm	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=81.24; coverage=100.657; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009637	response to blue light	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=81.24; coverage=100.657; evalue=0.0; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009908	flower development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=81.24; coverage=100.657; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010114	response to red light	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=81.24; coverage=100.657; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010498	proteasomal protein catabolic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=81.24; coverage=100.657; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0016567	protein ubiquitination	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=81.24; coverage=100.657; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-UniPathway	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0031146	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=81.24; coverage=100.657; evalue=0.0; UniProt GO evidence=IC:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0042752	regulation of circadian rhythm	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=81.24; coverage=100.657; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0043153	entrainment of circadian clock by photoperiod	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=81.24; coverage=100.657; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=81.24; coverage=100.657; evalue=0.0; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005829	cytosol	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=81.24; coverage=100.657; evalue=0.0; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0015030	Cajal body	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=73.366; coverage=100.493; evalue=0.0; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0019005	SCF ubiquitin ligase complex	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=81.24; coverage=100.657; evalue=0.0; UniProt GO evidence=IPI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009881	photoreceptor activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=76.768; coverage=97.537; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009882	blue light photoreceptor activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=81.24; coverage=100.657; evalue=0.0; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT2G18915	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=73.366; coverage=100.493; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT5G57360	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=81.24; coverage=100.657; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	dosa:Os06g0694000	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=76.768; coverage=97.537; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release