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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_027997
Query referenceOH1004
LocationChr06:28389261-28397299 (+)
DescriptionSimilar to MSH7: DNA mismatch repair protein MSH7 (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_027997 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 11 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g24495 Component of the post-replicative DNA mismatch repair system (MMR).
Arabidopsis MutS homologs-AtMSH2, AtMSH3, AtMSH6, and a novel AtMSH7-form three distinct protein heterodimers with different specificities for mismatched DNA.2000 · DOI: 10.1105/tpc.12.6.991
Dissimilar mispair-recognition spectra of Arabidopsis DNA-mismatch-repair proteins MSH2*MSH6 (MutSalpha) and MSH2*MSH7 (MutSgamma).2003 · DOI: 10.1093/nar/gkg780

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0006298mismatch repairBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.916; coverage=72.662; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0043570maintenance of DNA repeat elementsBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=37.174; coverage=36.771; evalue=1.21e-75; UniProt GO evidence=IMP:PomBaseUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.916; coverage=72.662; evalue=0.0; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005829cytosolCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=28.864; coverage=70.344; evalue=1.71e-79; UniProt GO evidence=IEA:TreeGrafterUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0032301MutSalpha complexCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.916; coverage=72.662; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003684damaged DNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=28.864; coverage=70.344; evalue=1.71e-79; UniProt GO evidence=IEA:UniProtKB-UniRuleUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005524ATP bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.916; coverage=72.662; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016887ATP hydrolysis activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=37.174; coverage=36.771; evalue=1.21e-75; UniProt GO evidence=IC:PomBaseUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0030983mismatched DNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.916; coverage=72.662; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0032137guanine/thymine mispair bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=37.174; coverage=36.771; evalue=1.21e-75; UniProt GO evidence=ISO:PomBaseUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0140664ATP-dependent DNA damage sensor activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.916; coverage=72.662; evalue=0.0; UniProt GO evidence=IEA:InterProUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT3G24495KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.916; coverage=72.662; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGcph:Cpha266_1896KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=28.864; coverage=70.344; evalue=1.71e-79UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGppd:Ppro_1064KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=28.538; coverage=68.905; evalue=8.21e-77UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGspo:2539215KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=37.174; coverage=36.771; evalue=1.21e-75UniProtKB/Swiss-Prot DAT 2026 current_release