Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_027771 |
|---|---|
| Query reference | OH1004 |
| Location | Chr06:23738085-23744007 (+) |
| Description | Similar to VPS54: Vacuolar protein sorting-associated protein 54%2C chloroplastic (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_027771 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 40 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At4g19490 |
Acts as a component of the GARP complex that is involved in retrograde transport from early and late endosomes to the trans-Golgi network (TGN). |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0006622 | protein targeting to lysosome | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=26.231; coverage=97.19; evalue=2.39e-73; UniProt GO evidence=IMP:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006623 | protein targeting to vacuole | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=26.231; coverage=97.19; evalue=2.39e-73; UniProt GO evidence=IMP:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006874 | intracellular calcium ion homeostasis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=26.231; coverage=97.19; evalue=2.39e-73; UniProt GO evidence=IMP:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006896 | Golgi to vacuole transport | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.256; coverage=105.515; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006941 | striated muscle contraction | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=26.231; coverage=97.19; evalue=2.39e-73; UniProt GO evidence=IMP:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0007005 | mitochondrion organization | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=26.231; coverage=97.19; evalue=2.39e-73; UniProt GO evidence=IMP:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0007033 | vacuole organization | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=26.231; coverage=97.19; evalue=2.39e-73; UniProt GO evidence=IMP:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0007041 | lysosomal transport | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=26.231; coverage=97.19; evalue=2.39e-73; UniProt GO evidence=ISO:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008104 | intracellular protein localization | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=26.231; coverage=97.19; evalue=2.39e-73; UniProt GO evidence=IMP:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010467 | gene expression | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=26.231; coverage=97.19; evalue=2.39e-73; UniProt GO evidence=IMP:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010992 | ubiquitin recycling | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=26.231; coverage=97.19; evalue=2.39e-73; UniProt GO evidence=IMP:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0015031 | protein transport | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.256; coverage=105.515; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0022904 | respiratory electron transport chain | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=26.231; coverage=97.19; evalue=2.39e-73; UniProt GO evidence=IMP:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0030149 | sphingolipid catabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=26.231; coverage=97.19; evalue=2.39e-73; UniProt GO evidence=IMP:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0034394 | protein localization to cell surface | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=26.231; coverage=97.19; evalue=2.39e-73; UniProt GO evidence=IMP:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0040008 | regulation of growth | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=26.231; coverage=97.19; evalue=2.39e-73; UniProt GO evidence=IMP:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042147 | retrograde transport, endosome to Golgi | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.256; coverage=105.515; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045047 | protein targeting to ER | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=26.231; coverage=97.19; evalue=2.39e-73; UniProt GO evidence=IMP:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0046677 | response to antibiotic | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=26.231; coverage=97.19; evalue=2.39e-73; UniProt GO evidence=IMP:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0048515 | spermatid differentiation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=26.231; coverage=97.19; evalue=2.39e-73; UniProt GO evidence=IMP:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0048872 | homeostasis of number of cells | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=26.231; coverage=97.19; evalue=2.39e-73; UniProt GO evidence=IMP:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0048873 | homeostasis of number of cells within a tissue | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=26.231; coverage=97.19; evalue=2.39e-73; UniProt GO evidence=IMP:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0051592 | response to calcium ion | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=26.231; coverage=97.19; evalue=2.39e-73; UniProt GO evidence=IMP:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0051938 | L-glutamate import | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=26.231; coverage=97.19; evalue=2.39e-73; UniProt GO evidence=IMP:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0060052 | neurofilament cytoskeleton organization | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=26.231; coverage=97.19; evalue=2.39e-73; UniProt GO evidence=IMP:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0070493 | thrombin-activated receptor signaling pathway | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=26.231; coverage=97.19; evalue=2.39e-73; UniProt GO evidence=IMP:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071393 | cellular response to progesterone stimulus | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=26.231; coverage=97.19; evalue=2.39e-73; UniProt GO evidence=IMP:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0090119 | vesicle-mediated cholesterol transport | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=26.231; coverage=97.19; evalue=2.39e-73; UniProt GO evidence=IMP:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000139 | Golgi membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.256; coverage=105.515; evalue=0.0; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000938 | GARP complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.256; coverage=105.515; evalue=0.0; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005654 | nucleoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=26.231; coverage=97.19; evalue=2.39e-73; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005737 | cytoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=26.231; coverage=97.19; evalue=2.39e-73; UniProt GO evidence=IDA:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005739 | mitochondrion | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=26.231; coverage=97.19; evalue=2.39e-73; UniProt GO evidence=IMP:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005794 | Golgi apparatus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.256; coverage=105.515; evalue=0.0; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005802 | trans-Golgi network | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=26.231; coverage=97.19; evalue=2.39e-73; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005829 | cytosol | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.256; coverage=105.515; evalue=0.0; UniProt GO evidence=IEA:GOC | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009507 | chloroplast | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.256; coverage=105.515; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016020 | membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=26.231; coverage=97.19; evalue=2.39e-73; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0032588 | trans-Golgi network membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=29.75; coverage=41.623; evalue=3.12e-42; UniProt GO evidence=TAS:Reactome | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0048471 | perinuclear region of cytoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=26.231; coverage=97.19; evalue=2.39e-73; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT4G19490 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.256; coverage=105.515; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | hsa:51542 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=29.75; coverage=41.623; evalue=3.12e-42 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | mmu:245944 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=26.231; coverage=97.19; evalue=2.39e-73 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | rno:286932 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=25.558; coverage=102.601; evalue=2.73e-70 | UniProtKB/Swiss-Prot DAT 2026 current_release |