Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_027766 |
|---|---|
| Query reference | OH1004 |
| Location | Chr06:23640884-23644973 (-) |
| Description | Similar to At3g52030: F-box/WD-40 repeat-containing protein At3g52030 (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_027766 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 47 GO annotations and 3 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At3g52030 |
F-box/WD-40 repeat-containing protein At3g52030. | No verified direct reference in this release |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0000266 | mitochondrial fission | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=22.0; coverage=34.562; evalue=2.95e-06; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006281 | DNA repair | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=19.767; coverage=99.078; evalue=8.1e-06; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006974 | DNA damage response | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=19.767; coverage=99.078; evalue=8.1e-06; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0007062 | sister chromatid cohesion | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=19.767; coverage=99.078; evalue=8.1e-06; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0007219 | Notch signaling pathway | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=19.767; coverage=99.078; evalue=8.1e-06; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010629 | negative regulation of gene expression | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=19.767; coverage=99.078; evalue=8.1e-06; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010992 | ubiquitin recycling | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=19.767; coverage=99.078; evalue=8.1e-06; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016559 | peroxisome fission | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=22.0; coverage=34.562; evalue=2.95e-06; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016567 | protein ubiquitination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=19.767; coverage=99.078; evalue=8.1e-06; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031146 | SCF-dependent proteasomal ubiquitin-dependent protein catabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=19.767; coverage=99.078; evalue=8.1e-06; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031398 | positive regulation of protein ubiquitination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=19.767; coverage=99.078; evalue=8.1e-06; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031648 | protein destabilization | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=19.767; coverage=99.078; evalue=8.1e-06; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0034644 | cellular response to UV | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=19.767; coverage=99.078; evalue=8.1e-06; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042752 | regulation of circadian rhythm | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=19.767; coverage=99.078; evalue=8.1e-06; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0043161 | proteasome-mediated ubiquitin-dependent protein catabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=19.767; coverage=99.078; evalue=8.1e-06; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045742 | positive regulation of epidermal growth factor receptor signaling pathway | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=19.767; coverage=99.078; evalue=8.1e-06; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045746 | negative regulation of Notch signaling pathway | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=19.767; coverage=99.078; evalue=8.1e-06; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0048511 | rhythmic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=19.767; coverage=99.078; evalue=8.1e-06; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0050821 | protein stabilization | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=19.767; coverage=99.078; evalue=8.1e-06; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0070374 | positive regulation of ERK1 and ERK2 cascade | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=19.767; coverage=99.078; evalue=8.1e-06; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0070534 | protein K63-linked ubiquitination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=19.767; coverage=99.078; evalue=8.1e-06; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1901524 | regulation of mitophagy | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=19.767; coverage=99.078; evalue=8.1e-06; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1901800 | positive regulation of proteasomal protein catabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=19.767; coverage=99.078; evalue=8.1e-06; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1903955 | positive regulation of protein targeting to mitochondrion | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=19.767; coverage=99.078; evalue=8.1e-06; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:2000060 | positive regulation of ubiquitin-dependent protein catabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=19.767; coverage=99.078; evalue=8.1e-06; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=44.47; coverage=102.074; evalue=7.27e-126; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005654 | nucleoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=19.767; coverage=99.078; evalue=8.1e-06; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005694 | chromosome | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=19.767; coverage=99.078; evalue=8.1e-06; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005730 | nucleolus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=19.767; coverage=99.078; evalue=8.1e-06; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005737 | cytoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=19.767; coverage=99.078; evalue=8.1e-06; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005739 | mitochondrion | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=22.0; coverage=34.562; evalue=2.95e-06; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005741 | mitochondrial outer membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=22.0; coverage=34.562; evalue=2.95e-06; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005783 | endoplasmic reticulum | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=19.767; coverage=99.078; evalue=8.1e-06; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005794 | Golgi apparatus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=19.767; coverage=99.078; evalue=8.1e-06; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0019005 | SCF ubiquitin ligase complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=19.767; coverage=99.078; evalue=8.1e-06; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0032991 | protein-containing complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=19.767; coverage=99.078; evalue=8.1e-06; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0048471 | perinuclear region of cytoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=19.767; coverage=99.078; evalue=8.1e-06; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071013 | catalytic step 2 spliceosome | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=44.47; coverage=102.074; evalue=7.27e-126; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1990452 | Parkin-FBXW7-Cul1 ubiquitin ligase complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=19.767; coverage=99.078; evalue=8.1e-06; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0030332 | cyclin binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=19.767; coverage=99.078; evalue=8.1e-06; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0030674 | protein-macromolecule adaptor activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=19.767; coverage=99.078; evalue=8.1e-06; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031625 | ubiquitin protein ligase binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=19.767; coverage=99.078; evalue=8.1e-06; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042802 | identical protein binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=19.767; coverage=99.078; evalue=8.1e-06; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0043130 | ubiquitin binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=19.767; coverage=99.078; evalue=8.1e-06; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0050816 | phosphothreonine residue binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=19.767; coverage=99.078; evalue=8.1e-06; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0097027 | ubiquitin-protein transferase activator activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=19.767; coverage=99.078; evalue=8.1e-06; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1990756 | ubiquitin-like ligase-substrate adaptor activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=19.767; coverage=99.078; evalue=8.1e-06; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT3G52030 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=44.47; coverage=102.074; evalue=7.27e-126 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | rno:100360914 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=19.767; coverage=99.078; evalue=8.1e-06 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ssl:SS1G_08568 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=22.0; coverage=34.562; evalue=2.95e-06 | UniProtKB/Swiss-Prot DAT 2026 current_release |