Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_027490 |
|---|---|
| Query reference | OH1004 |
| Location | Chr06:17138916-17141744 (-) |
| Description | Similar to PTAC14: Protein PLASTID TRANSCRIPTIONALLY ACTIVE 14 (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_027490 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 25 GO annotations and 2 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At4g20130 |
Essential for chloroplast development, especially for thylakoid formation. |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0006338 | chromatin remodeling | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=25.381; coverage=39.718; evalue=3.24e-07; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009416 | response to light stimulus | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.45; coverage=100.403; evalue=0.0; UniProt GO evidence=IEP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009658 | chloroplast organization | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.45; coverage=100.403; evalue=0.0; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009735 | response to cytokinin | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.45; coverage=100.403; evalue=0.0; UniProt GO evidence=IEP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010027 | thylakoid membrane organization | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.45; coverage=100.403; evalue=0.0; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0032259 | methylation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.45; coverage=100.403; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0032760 | positive regulation of tumor necrosis factor production | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=25.381; coverage=39.718; evalue=3.24e-07; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042793 | plastid transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.45; coverage=100.403; evalue=0.0; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045944 | positive regulation of transcription by RNA polymerase II | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=25.381; coverage=39.718; evalue=3.24e-07; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071863 | regulation of cell proliferation in bone marrow | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=25.381; coverage=39.718; evalue=3.24e-07; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000427 | plastid-encoded plastid RNA polymerase complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.45; coverage=100.403; evalue=0.0; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.45; coverage=100.403; evalue=0.0; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005829 | cytosol | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=25.381; coverage=39.718; evalue=3.24e-07; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009507 | chloroplast | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.45; coverage=100.403; evalue=0.0; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009534 | chloroplast thylakoid | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.45; coverage=100.403; evalue=0.0; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042644 | chloroplast nucleoid | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.45; coverage=100.403; evalue=0.0; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003677 | DNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.45; coverage=100.403; evalue=0.0; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003713 | transcription coactivator activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=25.381; coverage=39.718; evalue=3.24e-07; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016279 | protein-lysine N-methyltransferase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.45; coverage=100.403; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042799 | histone H4K20 methyltransferase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=25.381; coverage=39.718; evalue=3.24e-07; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042800 | histone H3K4 methyltransferase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=25.381; coverage=39.718; evalue=3.24e-07; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0046975 | histone H3K36 methyltransferase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=25.381; coverage=39.718; evalue=3.24e-07; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0140941 | histone H4K20me methyltransferase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=25.381; coverage=39.718; evalue=3.24e-07; UniProt GO evidence=IEA:RHEA | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0140944 | histone H4K20 monomethyltransferase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=25.381; coverage=39.718; evalue=3.24e-07; UniProt GO evidence=IEA:RHEA | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0140945 | histone H3K4 monomethyltransferase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=25.381; coverage=39.718; evalue=3.24e-07; UniProt GO evidence=IEA:UniProtKB-EC | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT4G20130 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.45; coverage=100.403; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | mmu:224440 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=25.381; coverage=39.718; evalue=3.24e-07 | UniProtKB/Swiss-Prot DAT 2026 current_release |