RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

Download current result

Gene IDLXL04_026687
Query referenceOH1004
LocationChr06:1400062-1401895 (+)
DescriptionSimilar to MGP4: UDP-D-xylose:L-fucose alpha-1%2C3-D-xylosyltransferase MGP4 (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_026687 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 12 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g01220 Catalyzes the transfer of D-xylose from UDP-alpha-D-xylose onto L-fucose.
Male gametophyte defective 4 encodes a rhamnogalacturonan II xylosyltransferase and is important for growth of pollen tubes and roots in Arabidopsis.2011 · DOI: 10.1111/j.1365-313x.2010.04452.x
At4g01770 Catalyzes the transfer of D-xylose from UDP-alpha-D-xylose onto L-fucose.
Arabidopsis thaliana RGXT1 and RGXT2 encode Golgi-localized (1,3)-alpha-D-xylosyltransferases involved in the synthesis of pectic rhamnogalacturonan-II.2006 · DOI: 10.1105/tpc.105.036566
Assay and heterologous expression in Pichia pastoris of plant cell wall type-II membrane anchored glycosyltransferases.2009 · DOI: 10.1007/s10719-009-9242-0
At4g01750 Catalyzes the transfer of D-xylose from UDP-alpha-D-xylose onto L-fucose.
Arabidopsis thaliana RGXT1 and RGXT2 encode Golgi-localized (1,3)-alpha-D-xylosyltransferases involved in the synthesis of pectic rhamnogalacturonan-II.2006 · DOI: 10.1105/tpc.105.036566
Assay and heterologous expression in Pichia pastoris of plant cell wall type-II membrane anchored glycosyltransferases.2009 · DOI: 10.1007/s10719-009-9242-0
At1g56550 Catalyzes the transfer of D-xylose from UDP-alpha-D-xylose onto L-fucose.
Functional characterisation of a putative rhamnogalacturonan II specific xylosyltransferase.2008 · DOI: 10.1016/j.febslet.2008.08.015
At1g70630 Beta-arabinofuranosyltransferase that transfers specifically an arabinosyl residue from UDP-arabinofuranose to the monosaccharide galactose or beta-methyl-galactoside in vitro. No verified direct reference in this release

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0010306rhamnogalacturonan II biosynthetic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=77.814; coverage=85.44; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0042546cell wall biogenesisBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=25.263; coverage=78.297; evalue=8.97e-14; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0048868pollen tube developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=77.814; coverage=85.44; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0071555cell wall organizationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=25.263; coverage=78.297; evalue=8.97e-14; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000138Golgi trans cisternaCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=77.814; coverage=85.44; evalue=0.0; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000139Golgi membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=77.814; coverage=85.44; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005737cytoplasmCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=25.263; coverage=78.297; evalue=8.97e-14; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005794Golgi apparatusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=77.814; coverage=85.44; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009507chloroplastCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=77.814; coverage=85.44; evalue=0.0; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016757glycosyltransferase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=25.263; coverage=78.297; evalue=8.97e-14; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0035252UDP-xylosyltransferase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=77.814; coverage=85.44; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0042285xylosyltransferase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=77.814; coverage=85.44; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT1G56550KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=72.378; coverage=78.571; evalue=1.72e-157UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT1G70630KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=25.263; coverage=78.297; evalue=8.97e-14UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT4G01220KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=77.814; coverage=85.44; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT4G01750KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=73.356; coverage=79.396; evalue=4.86e-159UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT4G01770KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=74.913; coverage=78.846; evalue=4.47e-160UniProtKB/Swiss-Prot DAT 2026 current_release