Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_026411 |
|---|---|
| Query reference | OH1004 |
| Location | Chr05:125946974-125949445 (+) |
| Description | Similar to CSN5B: COP9 signalosome complex subunit 5b (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_026411 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 40 GO annotations and 6 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At1g71230 |
Probable protease subunit of the COP9 signalosome complex (CSN), a complex involved in various cellular and developmental processes such as photomorphogenesis and auxin and jasmonate responses. | |
At1g22920 |
Probable protease subunit of the COP9 signalosome complex (CSN), a complex involved in various cellular and developmental processes such as photomorphogenesis and auxin and jasmonate responses. |
Rice
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
Os04g0654700 |
Probable protease subunit of the COP9 signalosome complex (CSN), a complex involved in various cellular and developmental processes such as photomorphogenesis and response to hormones (By similarity). |
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0000338 | protein deneddylation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=84.77; coverage=67.573; evalue=0.0; UniProt GO evidence=IGI:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006412 | translation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=68.437; coverage=65.825; evalue=2.41e-162; UniProt GO evidence=TAS:ProtInc | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006508 | proteolysis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=84.77; coverage=67.573; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009585 | red, far-red light phototransduction | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=84.77; coverage=67.573; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009640 | photomorphogenesis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=84.77; coverage=67.573; evalue=0.0; UniProt GO evidence=TAS:TIGR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009733 | response to auxin | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=84.77; coverage=67.573; evalue=0.0; UniProt GO evidence=IGI:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010093 | specification of floral organ identity | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=84.483; coverage=67.573; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010100 | negative regulation of photomorphogenesis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=84.77; coverage=67.573; evalue=0.0; UniProt GO evidence=IGI:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010387 | COP9 signalosome assembly | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=84.77; coverage=67.573; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010971 | positive regulation of G2/M transition of mitotic cell cycle | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=84.77; coverage=67.573; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0019954 | asexual reproduction | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=67.16; coverage=65.631; evalue=1.1e-168; UniProt GO evidence=IMP:dictyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031347 | regulation of defense response | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=84.483; coverage=67.573; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0043687 | post-translational protein modification | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=68.437; coverage=65.825; evalue=2.41e-162; UniProt GO evidence=TAS:Reactome | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045116 | protein neddylation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=68.437; coverage=65.825; evalue=2.41e-162; UniProt GO evidence=NAS:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045732 | positive regulation of protein catabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=84.77; coverage=67.573; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045944 | positive regulation of transcription by RNA polymerase II | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=68.437; coverage=65.825; evalue=2.41e-162; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0046328 | regulation of JNK cascade | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=68.437; coverage=65.825; evalue=2.41e-162; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0051726 | regulation of cell cycle | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=84.77; coverage=67.573; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1903894 | regulation of IRE1-mediated unfolded protein response | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=68.437; coverage=65.825; evalue=2.41e-162; UniProt GO evidence=IMP:ParkinsonsUK-UCL | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1990182 | exosomal secretion | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=68.437; coverage=65.825; evalue=2.41e-162; UniProt GO evidence=IDA:FlyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1990641 | response to iron ion starvation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=82.961; coverage=69.515; evalue=0.0; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:2000082 | regulation of L-ascorbic acid biosynthetic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=84.77; coverage=67.573; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:2000434 | regulation of protein neddylation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=68.437; coverage=65.825; evalue=2.41e-162; UniProt GO evidence=NAS:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000785 | chromatin | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=68.437; coverage=65.825; evalue=2.41e-162; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=84.77; coverage=67.573; evalue=0.0; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005654 | nucleoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=68.437; coverage=65.825; evalue=2.41e-162; UniProt GO evidence=IDA:HPA | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005737 | cytoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=84.77; coverage=67.573; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005829 | cytosol | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=68.437; coverage=65.825; evalue=2.41e-162; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005852 | eukaryotic translation initiation factor 3 complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=68.437; coverage=65.825; evalue=2.41e-162; UniProt GO evidence=TAS:ProtInc | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008180 | COP9 signalosome | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=84.77; coverage=67.573; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0048471 | perinuclear region of cytoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=68.437; coverage=65.825; evalue=2.41e-162; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003713 | transcription coactivator activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=68.437; coverage=65.825; evalue=2.41e-162; UniProt GO evidence=TAS:ProtInc | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003743 | translation initiation factor activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=68.437; coverage=65.825; evalue=2.41e-162; UniProt GO evidence=TAS:ProtInc | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008237 | metallopeptidase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=84.77; coverage=67.573; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0019784 | deNEDDylase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=84.77; coverage=67.573; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0019899 | enzyme binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=68.437; coverage=65.825; evalue=2.41e-162; UniProt GO evidence=IEA:Ensembl | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0035718 | macrophage migration inhibitory factor binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=68.437; coverage=65.825; evalue=2.41e-162; UniProt GO evidence=IEA:Ensembl | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0046872 | metal ion binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=84.77; coverage=67.573; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0101005 | deubiquitinase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=68.437; coverage=65.825; evalue=2.41e-162; UniProt GO evidence=TAS:Reactome | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0140492 | metal-dependent deubiquitinase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=68.437; coverage=65.825; evalue=2.41e-162; UniProt GO evidence=IDA:FlyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT1G22920 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=84.483; coverage=67.573; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT1G71230 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=84.77; coverage=67.573; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ddi:DDB_G0284597 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=67.16; coverage=65.631; evalue=1.1e-168 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | dosa:Os04g0654700 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=82.961; coverage=69.515; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | hsa:10987 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=68.437; coverage=65.825; evalue=2.41e-162 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | osa:4337249 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=82.961; coverage=69.515; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release |