Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`LXL04_026290`
Query reference	OH1004
Location	Chr05:124426386-124427574 (+)
Description	Similar to EREBP1: Ethylene-responsive transcription factor 1 (Oryza sativa subsp. japonica OX%3D39947)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_026290 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 27 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g14230`	Transcription factor involved in carotenoid biosynthesis regulation.	Arabidopsis RAP2.2: an ethylene response transcription factor that is important for hypoxia survival.2010 · DOI: 10.1104/pp.110.155077
`At1g53910`	Transcription factor involved in the activation of hypoxic gene expression and in ethylene response.	No verified direct reference in this release
`At3g16770`	Probably acts as a transcriptional activator.	No verified direct reference in this release
`At1g72360`	Transcriptional activator involved in the hypoxic stress response.	HRE1 and HRE2, two hypoxia-inducible ethylene response factors, affect anaerobic responses in Arabidopsis thaliana.2010 · DOI: 10.1111/j.1365-313x.2010.04149.x The AP2/ERF transcription factor AtERF73/HRE1 modulates ethylene responses during hypoxia in Arabidopsis.2011 · DOI: 10.1104/pp.111.172486 The hypoxia responsive transcription factor genes ERF71/HRE2 and ERF73/HRE1 of Arabidopsis are differentially regulated by ethylene.2011 · DOI: 10.1111/j.1399-3054.2011.01486.x Arabidopsis HRE1α, a splicing variant of AtERF73/HRE1, functions as a nuclear transcription activator in hypoxia response and root development.2014 · DOI: 10.1007/s00299-014-1613-8 Two Alternative Splicing Variants of AtERF73/HRE1, HRE1α and HRE1β, Have Differential Transactivation Activities in Arabidopsis.2020 · DOI: 10.3390/ijms21196984

Rice

Reference gene ID	Possible function	Papers / DOI
`Os02g0782700`	Probable transcriptional activator that may be involved in defense signaling pathway.	BWMK1, a rice mitogen-activated protein kinase, locates in the nucleus and mediates pathogenesis-related gene expression by activation of a transcription factor.2003 · DOI: 10.1104/pp.103.023176

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0001666	response to hypoxia	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=42.199; coverage=107.634; evalue=3.58e-41; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006351	DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=42.803; coverage=100.763; evalue=5.12e-52; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006355	regulation of DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=38.967; coverage=81.298; evalue=2.41e-27; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006952	defense response	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=42.803; coverage=100.763; evalue=5.12e-52; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009723	response to ethylene	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=46.763; coverage=53.053; evalue=2.33e-28; UniProt GO evidence=IEP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009735	response to cytokinin	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=46.763; coverage=53.053; evalue=2.33e-28; UniProt GO evidence=IEP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009753	response to jasmonic acid	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=46.763; coverage=53.053; evalue=2.33e-28; UniProt GO evidence=IEP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009873	ethylene-activated signaling pathway	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=42.803; coverage=100.763; evalue=5.12e-52; UniProt GO evidence=IEA:InterPro	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010286	heat acclimation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=46.763; coverage=53.053; evalue=2.33e-28; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010468	regulation of gene expression	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=42.199; coverage=107.634; evalue=3.58e-41; UniProt GO evidence=IEP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0012501	programmed cell death	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=46.763; coverage=53.053; evalue=2.33e-28; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0034059	response to anoxia	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=38.967; coverage=81.298; evalue=2.41e-27; UniProt GO evidence=IGI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0045893	positive regulation of DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=46.763; coverage=53.053; evalue=2.33e-28; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0051707	response to other organism	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=46.763; coverage=53.053; evalue=2.33e-28; UniProt GO evidence=IEP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0070483	detection of hypoxia	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=43.985; coverage=101.527; evalue=1.59e-40; UniProt GO evidence=IEP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0071369	cellular response to ethylene stimulus	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=38.967; coverage=81.298; evalue=2.41e-27; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0071454	cellular response to anoxia	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=38.967; coverage=81.298; evalue=2.41e-27; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0071456	cellular response to hypoxia	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=38.967; coverage=81.298; evalue=2.41e-27; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0090548	response to nitrate starvation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=46.763; coverage=53.053; evalue=2.33e-28; UniProt GO evidence=IEP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:2000280	regulation of root development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=43.985; coverage=101.527; evalue=1.59e-40; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=42.803; coverage=100.763; evalue=5.12e-52; UniProt GO evidence=IEA:UniProtKB-SubCell	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005737	cytoplasm	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=46.763; coverage=53.053; evalue=2.33e-28; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005886	plasma membrane	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=43.985; coverage=101.527; evalue=1.59e-40; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000976	transcription cis-regulatory region binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=42.199; coverage=107.634; evalue=3.58e-41; UniProt GO evidence=IPI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003677	DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=42.803; coverage=100.763; evalue=5.12e-52; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003700	DNA-binding transcription factor activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=42.803; coverage=100.763; evalue=5.12e-52; UniProt GO evidence=IEA:InterPro	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0043565	sequence-specific DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=38.967; coverage=81.298; evalue=2.41e-27; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G53910	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=43.985; coverage=101.527; evalue=1.59e-40	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G72360	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=38.967; coverage=81.298; evalue=2.41e-27	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT3G14230	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=42.199; coverage=107.634; evalue=3.58e-41	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT3G16770	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=46.763; coverage=53.053; evalue=2.33e-28	UniProtKB/Swiss-Prot DAT 2026 current_release