Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`LXL04_026108`
Query reference	OH1004
Location	Chr05:121023339-121026178 (+)
Description	Similar to JMJ706: Lysine-specific demethylase JMJ706 (Oryza sativa subsp. japonica OX%3D39947)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_026108 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 51 GO annotations and 6 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g46910`	Histone demethylase that demethylates 'Lys-27' (H3K27me) of histone H3 with a specific activity for H3K27me3 and involved in the regulation of gene expression.	The Arabidopsis H3K27me3 demethylase JUMONJI 13 is a temperature and photoperiod dependent flowering repressor.2019 · DOI: 10.1038/s41467-019-09310-x
`At3g48430`	Histone demethylase that demethylates 'Lys-27' (H3K27me) of histone H3, thus acting as a positive regulator of gene expression.	Divergent roles of a pair of homologous jumonji/zinc-finger-class transcription factor proteins in the regulation of Arabidopsis flowering time.2004 · DOI: 10.1105/tpc.104.025353 Modulation of brassinosteroid-regulated gene expression by Jumonji domain-containing proteins ELF6 and REF6 in Arabidopsis.2008 · DOI: 10.1073/pnas.0802254105 Arabidopsis REF6 is a histone H3 lysine 27 demethylase.2011 · DOI: 10.1038/ng.854 Nuclear factor Y-mediated H3K27me3 demethylation of the SOC1 locus orchestrates flowering responses of Arabidopsis.2014 · DOI: 10.1038/ncomms5601 Concerted genomic targeting of H3K27 demethylase REF6 and chromatin-remodeling ATPase BRM in Arabidopsis.2016 · DOI: 10.1038/ng.3555 REF6 recognizes a specific DNA sequence to demethylate H3K27me3 and regulate organ boundary formation in Arabidopsis.2016 · DOI: 10.1038/ng.3556 An H3K27me3 demethylase-HSFA2 regulatory loop orchestrates transgenerational thermomemory in Arabidopsis.2019 · DOI: 10.1038/s41422-019-0145-8 DNA methylation repels targeting of Arabidopsis REF6.2019 · DOI: 10.1038/s41467-019-10026-1 Epigenetic silencing of a multifunctional plant stress regulator.2019 · DOI: 10.7554/elife.47835 Crystal structures of REF6 and its complex with DNA reveal diverse recognition mechanisms.2020 · DOI: 10.1038/s41421-020-0150-6 Dehydroabietinal promotes flowering time and plant defense in Arabidopsis via the autonomous pathway genes FLOWERING LOCUS D, FVE, and RELATIVE OF EARLY FLOWERING 6.2020 · DOI: 10.1093/jxb/eraa232 The H3K27me3 Demethylase RELATIVE OF EARLY FLOWERING6 Suppresses Seed Dormancy by Inducing Abscisic Acid Catabolism.2020 · DOI: 10.1104/pp.20.01255 A new role for histone demethylases in the maintenance of plant genome integrity.2020 · DOI: 10.7554/elife.58533

Rice

Reference gene ID	Possible function	Papers / DOI
`Os10g0577600`	Histone demethylase that demethylates 'Lys-9' (H3K9me) of histone H3 with a specific activity for H3K9me3 and H3K9me2.	Rice jmjC domain-containing gene JMJ706 encodes H3K9 demethylase required for floral organ development.2008 · DOI: 10.1073/pnas.0805901105
`Os03g0151300`	Histone demethylase that demethylates 'Lys-4' (H3K4me) of histone H3.	Se14, encoding a JmjC domain-containing protein, plays key roles in long-day suppression of rice flowering through the demethylation of H3K4me3 of RFT1.2014 · DOI: 10.1371/journal.pone.0096064
`Os01g0907400`	Histone demethylase that demethylates 'Lys-27' (H3K27me) of histone H3 with a specific activity for H3K27me3 and H3K27me2.	Jumonji C domain protein JMJ705-mediated removal of histone H3 lysine 27 trimethylation is involved in defense-related gene activation in rice.2013 · DOI: 10.1105/tpc.113.118802

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0006338	chromatin remodeling	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.264; coverage=88.905; evalue=0.0; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006351	DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.264; coverage=88.905; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006355	regulation of DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.264; coverage=88.905; evalue=0.0; UniProt GO evidence=TAS:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006952	defense response	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=39.744; coverage=56.196; evalue=6.09e-70; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009266	response to temperature stimulus	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.264; coverage=88.905; evalue=0.0; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009408	response to heat	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=33.779; coverage=75.504; evalue=1.1e-69; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009612	response to mechanical stimulus	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=33.779; coverage=75.504; evalue=1.1e-69; UniProt GO evidence=IEP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009627	systemic acquired resistance	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=33.779; coverage=75.504; evalue=1.1e-69; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009737	response to abscisic acid	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=33.779; coverage=75.504; evalue=1.1e-69; UniProt GO evidence=IEP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009738	abscisic acid-activated signaling pathway	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=33.779; coverage=75.504; evalue=1.1e-69; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009741	response to brassinosteroid	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=33.779; coverage=75.504; evalue=1.1e-69; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009826	unidimensional cell growth	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=33.779; coverage=75.504; evalue=1.1e-69; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009873	ethylene-activated signaling pathway	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=33.779; coverage=75.504; evalue=1.1e-69; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009908	flower development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.264; coverage=88.905; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010104	regulation of ethylene-activated signaling pathway	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=33.779; coverage=75.504; evalue=1.1e-69; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010182	sugar mediated signaling pathway	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=33.779; coverage=75.504; evalue=1.1e-69; UniProt GO evidence=TAS:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010228	vegetative to reproductive phase transition of meristem	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=33.779; coverage=75.504; evalue=1.1e-69; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010286	heat acclimation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=33.779; coverage=75.504; evalue=1.1e-69; UniProt GO evidence=IEP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010468	regulation of gene expression	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.264; coverage=88.905; evalue=0.0; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010628	positive regulation of gene expression	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=33.779; coverage=75.504; evalue=1.1e-69; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0040010	positive regulation of growth rate	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=39.744; coverage=56.196; evalue=6.09e-70; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0040029	epigenetic regulation of gene expression	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=33.779; coverage=75.504; evalue=1.1e-69; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0045814	negative regulation of gene expression, epigenetic	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.264; coverage=88.905; evalue=0.0; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0045815	transcription initiation-coupled chromatin remodeling	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=61.243; coverage=78.818; evalue=0.0; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0046345	abscisic acid catabolic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=33.779; coverage=75.504; evalue=1.1e-69; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0048366	leaf development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=33.779; coverage=75.504; evalue=1.1e-69; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0048439	flower morphogenesis	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=61.243; coverage=78.818; evalue=0.0; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0048571	long-day photoperiodism	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.264; coverage=88.905; evalue=0.0; UniProt GO evidence=IEP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0048577	negative regulation of short-day photoperiodism, flowering	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.264; coverage=88.905; evalue=0.0; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0048579	negative regulation of long-day photoperiodism, flowering	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.264; coverage=88.905; evalue=0.0; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0048838	release of seed from dormancy	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=33.779; coverage=75.504; evalue=1.1e-69; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0051260	protein homooligomerization	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=33.779; coverage=75.504; evalue=1.1e-69; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0097355	protein localization to heterochromatin	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=33.779; coverage=75.504; evalue=1.1e-69; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:1901333	positive regulation of lateral root development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=33.779; coverage=75.504; evalue=1.1e-69; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:1904629	response to diterpene	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=33.779; coverage=75.504; evalue=1.1e-69; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:2000028	regulation of photoperiodism, flowering	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=33.779; coverage=75.504; evalue=1.1e-69; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000785	chromatin	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.264; coverage=88.905; evalue=0.0; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000792	heterochromatin	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=61.243; coverage=78.818; evalue=0.0; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.264; coverage=88.905; evalue=0.0; UniProt GO evidence=ISM:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0031011	Ino80 complex	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=33.779; coverage=75.504; evalue=1.1e-69; UniProt GO evidence=TAS:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003700	DNA-binding transcription factor activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.264; coverage=88.905; evalue=0.0; UniProt GO evidence=ISS:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0008270	zinc ion binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.264; coverage=88.905; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0032452	histone demethylase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.264; coverage=88.905; evalue=0.0; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0032454	histone H3K9 demethylase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=61.243; coverage=78.818; evalue=0.0; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0034647	histone H3K4me/H3K4me2/H3K4me3 demethylase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=37.879; coverage=57.061; evalue=1.18e-70; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0042393	histone binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.264; coverage=88.905; evalue=0.0; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0042803	protein homodimerization activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=33.779; coverage=75.504; evalue=1.1e-69; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0043565	sequence-specific DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=33.779; coverage=75.504; evalue=1.1e-69; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0046872	metal ion binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=61.243; coverage=78.818; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0071558	histone H3K27me2/H3K27me3 demethylase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.264; coverage=88.905; evalue=0.0; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0140684	histone H3K9me2/H3K9me3 demethylase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=61.243; coverage=78.818; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-EC	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT3G48430	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=33.779; coverage=75.504; evalue=1.1e-69	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT5G46910	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.264; coverage=88.905; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	dosa:Os01g0907400	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=39.744; coverage=56.196; evalue=6.09e-70	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	dosa:Os03g0151300	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=37.879; coverage=57.061; evalue=1.18e-70	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	dosa:Os10g0577600	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=61.243; coverage=78.818; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	osa:9268736	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=37.879; coverage=57.061; evalue=1.18e-70	UniProtKB/Swiss-Prot DAT 2026 current_release