Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_026009 |
|---|---|
| Query reference | OH1004 |
| Location | Chr05:119721476-119723111 (-) |
| Description | Similar to PUB12: U-box domain-containing protein 12 (Oryza sativa subsp. japonica OX%3D39947) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_026009 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 15 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At3g46510 |
Functions as an E3 ubiquitin ligase. | No verified direct reference in this release |
At1g71020 |
Functions as an E3 ubiquitin ligase. | No verified direct reference in this release |
At2g28830 |
Functions as an E3 ubiquitin ligase. | No verified direct reference in this release |
At1g23030 |
Functions as an E3 ubiquitin ligase. | No verified direct reference in this release |
Rice
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
Os06g0102700 |
Possesses E3 ubiquitin-protein ligase in vitro. | No verified direct reference in this release |
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0007166 | cell surface receptor signaling pathway | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=32.414; coverage=59.426; evalue=4e-23; UniProt GO evidence=IEA:InterPro | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016567 | protein ubiquitination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=31.834; coverage=59.221; evalue=3.67e-23; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031648 | protein destabilization | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=31.615; coverage=59.631; evalue=2.64e-21; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042742 | defense response to bacterium | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=32.414; coverage=59.426; evalue=4e-23; UniProt GO evidence=IGI:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0050777 | negative regulation of immune response | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=32.414; coverage=59.426; evalue=4e-23; UniProt GO evidence=IGI:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0051865 | protein autoubiquitination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=31.615; coverage=59.631; evalue=2.64e-21; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0090333 | regulation of stomatal closure | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=28.966; coverage=59.426; evalue=2.93e-20; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:2000022 | regulation of jasmonic acid mediated signaling pathway | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=31.615; coverage=59.631; evalue=2.64e-21; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:2000028 | regulation of photoperiodism, flowering | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=32.414; coverage=59.426; evalue=4e-23; UniProt GO evidence=IMP:CACAO | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=31.834; coverage=59.221; evalue=3.67e-23; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005737 | cytoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=31.834; coverage=59.221; evalue=3.67e-23; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005829 | cytosol | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=32.414; coverage=59.426; evalue=4e-23; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0004842 | ubiquitin-protein transferase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=31.834; coverage=59.221; evalue=3.67e-23; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0061630 | ubiquitin protein ligase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=31.834; coverage=59.221; evalue=3.67e-23; UniProt GO evidence=IEA:UniProtKB-EC | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0070696 | transmembrane receptor protein serine/threonine kinase binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=32.414; coverage=59.426; evalue=4e-23; UniProt GO evidence=IPI:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT1G23030 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=28.966; coverage=59.426; evalue=2.93e-20 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT1G71020 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=31.615; coverage=59.631; evalue=2.64e-21 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT2G28830 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=31.615; coverage=59.631; evalue=1.47e-20 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT3G46510 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=32.414; coverage=59.426; evalue=4e-23 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | dosa:Os06g0102700 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=31.834; coverage=59.221; evalue=3.67e-23 | UniProtKB/Swiss-Prot DAT 2026 current_release |