Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_025877 |
|---|---|
| Query reference | OH1004 |
| Location | Chr05:118029612-118031211 (+) |
| Description | Similar to REIL1: Cytoplasmic 60S subunit biogenesis factor REI1 homolog 1 (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_025877 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 20 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At4g31420 |
Pre-60S-associated factor involved in the cytoplasmic maturation of the 60S subunit. | |
At2g24500 |
Pre-60S-associated factor involved in the cytoplasmic maturation of the 60S subunit. |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0006355 | regulation of DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.746; coverage=109.651; evalue=8.86e-147; UniProt GO evidence=TAS:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006364 | rRNA processing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=55.138; coverage=106.971; evalue=1.15e-146; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006913 | nucleocytoplasmic transport | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=28.182; coverage=88.472; evalue=3.09e-34; UniProt GO evidence=ISO:PomBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009631 | cold acclimation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.746; coverage=109.651; evalue=8.86e-147; UniProt GO evidence=IGI:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042273 | ribosomal large subunit biogenesis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.746; coverage=109.651; evalue=8.86e-147; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0046330 | positive regulation of JNK cascade | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=31.466; coverage=62.198; evalue=4.65e-25; UniProt GO evidence=IEA:Ensembl | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0090070 | positive regulation of ribosome biogenesis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.746; coverage=109.651; evalue=8.86e-147; UniProt GO evidence=IGI:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.746; coverage=109.651; evalue=8.86e-147; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005654 | nucleoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=31.466; coverage=62.198; evalue=4.65e-25; UniProt GO evidence=IEA:Ensembl | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005730 | nucleolus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=31.466; coverage=62.198; evalue=4.65e-25; UniProt GO evidence=IEA:Ensembl | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005737 | cytoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=55.138; coverage=106.971; evalue=1.15e-146; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005829 | cytosol | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.746; coverage=109.651; evalue=8.86e-147; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005886 | plasma membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.746; coverage=109.651; evalue=8.86e-147; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0030687 | preribosome, large subunit precursor | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.746; coverage=109.651; evalue=8.86e-147; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000976 | transcription cis-regulatory region binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.746; coverage=109.651; evalue=8.86e-147; UniProt GO evidence=IPI:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003676 | nucleic acid binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=28.182; coverage=88.472; evalue=3.09e-34; UniProt GO evidence=IEA:InterPro | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003700 | DNA-binding transcription factor activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.746; coverage=109.651; evalue=8.86e-147; UniProt GO evidence=ISS:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008270 | zinc ion binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.746; coverage=109.651; evalue=8.86e-147; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0043023 | ribosomal large subunit binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=26.747; coverage=111.26; evalue=2.81e-25; UniProt GO evidence=IDA:SGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1990275 | preribosome binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=31.466; coverage=62.198; evalue=4.65e-25; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT2G24500 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=55.138; coverage=106.971; evalue=1.15e-146 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT4G31420 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.746; coverage=109.651; evalue=8.86e-147 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | mmu:52521 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=31.466; coverage=62.198; evalue=4.65e-25 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | sce:YLR387C | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=26.747; coverage=111.26; evalue=2.81e-25 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | spo:2539563 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=28.182; coverage=88.472; evalue=3.09e-34 | UniProtKB/Swiss-Prot DAT 2026 current_release |