Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`LXL04_025855`
Query reference	OH1004
Location	Chr05:117725418-117727015 (+)
Description	Similar to RZFP34: Probable E3 ubiquitin-protein ligase RZFP34 (Oryza sativa subsp. japonica OX%3D39947)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_025855 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 23 GO annotations and 7 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g22920`	Possesses E3 ubiquitin-protein ligase activity in vitro.	Expression of a gene encoding a rice RING zinc-finger protein, OsRZFP34, enhances stomata opening.2014 · DOI: 10.1007/s11103-014-0217-6 Arabidopsis RZFP34/CHYR1, a Ubiquitin E3 Ligase, Regulates Stomatal Movement and Drought Tolerance via SnRK2.6-Mediated Phosphorylation.2015 · DOI: 10.1105/tpc.15.00321
`At5g18650`	E3 ubiquitin-protein ligase that acts as a regulator of cell death and defense.	Arabidopsis ubiquitin ligase MIEL1 mediates degradation of the transcription factor MYB30 weakening plant defence.2013 · DOI: 10.1038/ncomms2479

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0719100`	Possesses transactivation activity in yeast cells (Ref.1).	Expression of a gene encoding a rice RING zinc-finger protein, OsRZFP34, enhances stomata opening.2014 · DOI: 10.1007/s11103-014-0217-6
`Os03g0348900`	Possesses E3 ubiquitin-protein ligase activity in vitro.	Knock-down of stress inducible OsSRFP1 encoding an E3 ubiquitin ligase with transcriptional activation activity confers abiotic stress tolerance through enhancing antioxidant protection in rice.2015 · DOI: 10.1007/s11103-015-0294-1

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0006511	ubiquitin-dependent protein catabolic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=70.968; coverage=90.182; evalue=1.23e-136; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006952	defense response	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=55.422; coverage=90.545; evalue=8.23e-102; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010255	glucose mediated signaling pathway	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=70.968; coverage=90.182; evalue=1.23e-136; UniProt GO evidence=IEA:EnsemblPlants	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0016567	protein ubiquitination	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=70.968; coverage=90.182; evalue=1.23e-136; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0031398	positive regulation of protein ubiquitination	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=45.344; coverage=89.818; evalue=3.56e-72; UniProt GO evidence=ISO:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0032436	positive regulation of proteasomal ubiquitin-dependent protein catabolic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=55.422; coverage=90.545; evalue=8.23e-102; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0051865	protein autoubiquitination	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=45.344; coverage=89.818; evalue=3.56e-72; UniProt GO evidence=ISS:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0072344	rescue of stalled cytosolic ribosome	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=45.344; coverage=89.818; evalue=3.56e-72; UniProt GO evidence=ISS:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:1900425	negative regulation of defense response to bacterium	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=55.422; coverage=90.545; evalue=8.23e-102; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:1902456	regulation of stomatal opening	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=66.667; coverage=89.455; evalue=3.09e-128; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000151	ubiquitin ligase complex	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=45.344; coverage=89.818; evalue=3.56e-72; UniProt GO evidence=ISS:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=70.968; coverage=90.182; evalue=1.23e-136; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005654	nucleoplasm	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=45.344; coverage=89.818; evalue=3.56e-72; UniProt GO evidence=ISO:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005737	cytoplasm	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=70.968; coverage=90.182; evalue=1.23e-136; UniProt GO evidence=IEA:EnsemblPlants	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005783	endoplasmic reticulum	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=66.667; coverage=89.455; evalue=3.09e-128; UniProt GO evidence=IEA:UniProtKB-SubCell	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005829	cytosol	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=45.344; coverage=89.818; evalue=3.56e-72; UniProt GO evidence=ISO:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0016607	nuclear speck	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=45.344; coverage=89.818; evalue=3.56e-72; UniProt GO evidence=IEA:UniProtKB-SubCell	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0002039	p53 binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=45.344; coverage=89.818; evalue=3.56e-72; UniProt GO evidence=ISO:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0004842	ubiquitin-protein transferase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=55.422; coverage=90.545; evalue=8.23e-102; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005102	signaling receptor binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=45.344; coverage=89.818; evalue=3.56e-72; UniProt GO evidence=ISO:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0008270	zinc ion binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=70.968; coverage=90.182; evalue=1.23e-136; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0042803	protein homodimerization activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=45.344; coverage=89.818; evalue=3.56e-72; UniProt GO evidence=ISO:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0061630	ubiquitin protein ligase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=70.968; coverage=90.182; evalue=1.23e-136; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT5G18650	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=55.422; coverage=90.545; evalue=8.23e-102	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT5G22920	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=66.667; coverage=89.455; evalue=3.09e-128	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	dosa:Os01g0719100	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=70.968; coverage=90.182; evalue=1.23e-136	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	dosa:Os03g0348900	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=49.388; coverage=89.091; evalue=1.6e-84	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	mmu:68098	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=45.344; coverage=89.818; evalue=3.56e-72	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	osa:4324695	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=70.968; coverage=90.182; evalue=1.23e-136	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	osa:4332833	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=49.388; coverage=89.091; evalue=1.6e-84	UniProtKB/Swiss-Prot DAT 2026 current_release