Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`LXL04_025798`
Query reference	OH1004
Location	Chr05:117008032-117012787 (+)
Description	Similar to PBB2: Proteasome subunit beta type-7-B (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_025798 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 26 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g23190`	Involved in very long chain fatty acids (VLCFA) omega- hydroxylation.	CYP86B1 is required for very long chain omega-hydroxyacid and alpha, omega -dicarboxylic acid synthesis in root and seed suberin polyester.2009 · DOI: 10.1104/pp.109.141408 Identification of an Arabidopsis feruloyl-coenzyme A transferase required for suberin synthesis.2009 · DOI: 10.1104/pp.109.144907
`At5g40580`	The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH.	No verified direct reference in this release
`At3g27430`	The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH.	No verified direct reference in this release
`At1g63710`	Catalyzes the omega-hydroxylation of various fatty acids (FA).	Molecular definitions of fatty acid hydroxylases in Arabidopsis thaliana.2007 · DOI: 10.1002/prot.21335
`At1g01600`	Catalyzes the omega-hydroxylation of various fatty acids (FA).	Molecular definitions of fatty acid hydroxylases in Arabidopsis thaliana.2007 · DOI: 10.1002/prot.21335 Nanoridges that characterize the surface morphology of flowers require the synthesis of cutin polyester.2009 · DOI: 10.1073/pnas.0909090106

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0006511	ubiquitin-dependent protein catabolic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=81.752; coverage=31.787; evalue=1.55e-164; UniProt GO evidence=TAS:TIGR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006631	fatty acid metabolic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=38.54; coverage=57.193; evalue=3.48e-121; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010345	suberin biosynthetic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=48.0; coverage=58.005; evalue=3.08e-164; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0042761	very long-chain fatty acid biosynthetic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=48.0; coverage=58.005; evalue=3.08e-164; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=81.752; coverage=31.787; evalue=1.55e-164; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0071555	cell wall organization	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=48.0; coverage=58.005; evalue=3.08e-164; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000502	proteasome complex	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=81.752; coverage=31.787; evalue=1.55e-164; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=81.752; coverage=31.787; evalue=1.55e-164; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005737	cytoplasm	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=81.387; coverage=31.787; evalue=2.96e-162; UniProt GO evidence=ISM:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005739	mitochondrion	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=38.583; coverage=58.933; evalue=5.76e-116; UniProt GO evidence=ISM:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005783	endoplasmic reticulum	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=48.0; coverage=58.005; evalue=3.08e-164; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005789	endoplasmic reticulum membrane	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=48.0; coverage=58.005; evalue=3.08e-164; UniProt GO evidence=IEA:UniProtKB-SubCell	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005829	cytosol	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=81.752; coverage=31.787; evalue=1.55e-164; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005839	proteasome core complex	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=81.752; coverage=31.787; evalue=1.55e-164; UniProt GO evidence=TAS:TIGR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009507	chloroplast	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=48.0; coverage=58.005; evalue=3.08e-164; UniProt GO evidence=ISM:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009536	plastid	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=81.752; coverage=31.787; evalue=1.55e-164; UniProt GO evidence=HDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0016020	membrane	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=38.54; coverage=57.193; evalue=3.48e-121; UniProt GO evidence=IEA:UniProtKB-SubCell	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0019774	proteasome core complex, beta-subunit complex	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=81.752; coverage=31.787; evalue=1.55e-164; UniProt GO evidence=ISS:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0004175	endopeptidase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=81.752; coverage=31.787; evalue=1.55e-164; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0004298	threonine-type endopeptidase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=81.752; coverage=31.787; evalue=1.55e-164; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0004497	monooxygenase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=48.0; coverage=58.005; evalue=3.08e-164; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005506	iron ion binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=48.0; coverage=58.005; evalue=3.08e-164; UniProt GO evidence=IEA:InterPro	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=48.0; coverage=58.005; evalue=3.08e-164; UniProt GO evidence=IEA:InterPro	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0016712	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=38.54; coverage=57.193; evalue=3.48e-121; UniProt GO evidence=IEA:UniProtKB-EC	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0018685	alkane 1-monooxygenase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=38.54; coverage=57.193; evalue=3.48e-121; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0020037	heme binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=48.0; coverage=58.005; evalue=3.08e-164; UniProt GO evidence=IEA:InterPro	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G01600	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=38.583; coverage=58.933; evalue=5.76e-116	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G63710	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=38.54; coverage=57.193; evalue=3.48e-121	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT3G27430	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=81.387; coverage=31.787; evalue=2.96e-162	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT5G23190	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=48.0; coverage=58.005; evalue=3.08e-164	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT5G40580	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=81.752; coverage=31.787; evalue=1.55e-164	UniProtKB/Swiss-Prot DAT 2026 current_release