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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_025779
Query referenceOH1004
LocationChr05:116838270-116840010 (-)
DescriptionSimilar to GT-1: Trihelix transcription factor GT-1 (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_025779 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 15 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g13450 Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. No verified direct reference in this release
At3g25990 Probable transcription factor that binds specific DNA sequence. No verified direct reference in this release
At2g38250 Probable transcription factor that may play a role in the induction of CAM4 in response to pathogen and salt.
Pathogen- and NaCl-induced expression of the SCaM-4 promoter is mediated in part by a GT-1 box that interacts with a GT-1-like transcription factor.2004 · DOI: 10.1104/pp.104.041442
At1g76880 Transcription repressor that negatively regulates root hair growth by directly binding RSL4 promoter and repressing RSL4 expression. No verified direct reference in this release
At5g01380 Probable transcription factor that binds specifically to the core DNA sequence 5'-GTTAC-3'.
Analysis of GT-3a identifies a distinct subgroup of trihelix DNA-binding transcription factors in Arabidopsis.2004 · DOI: 10.1016/s0014-5793(04)00222-4

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0006351DNA-templated transcriptionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.687; coverage=88.158; evalue=7.61e-151; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006355regulation of DNA-templated transcriptionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.687; coverage=88.158; evalue=7.61e-151; UniProt GO evidence=TAS:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0019760glucosinolate metabolic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=31.783; coverage=33.947; evalue=3.27e-10; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0048354mucilage biosynthetic process involved in seed coat developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=31.783; coverage=33.947; evalue=3.27e-10; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0048358mucilage pectin biosynthetic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=31.783; coverage=33.947; evalue=3.27e-10; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0048768root hair cell tip growthBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=31.783; coverage=33.947; evalue=3.27e-10; UniProt GO evidence=IEP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.687; coverage=88.158; evalue=7.61e-151; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005730nucleolusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=33.571; coverage=36.842; evalue=2.03e-12; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016592mediator complexCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=33.571; coverage=36.842; evalue=2.03e-12; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000976transcription cis-regulatory region bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.687; coverage=88.158; evalue=7.61e-151; UniProt GO evidence=IPI:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000987cis-regulatory region sequence-specific DNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=31.783; coverage=33.947; evalue=3.27e-10; UniProt GO evidence=IPI:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003677DNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=55.409; coverage=99.737; evalue=1.01e-149; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003700DNA-binding transcription factor activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.687; coverage=88.158; evalue=7.61e-151; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0042802identical protein bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.687; coverage=88.158; evalue=7.61e-151; UniProt GO evidence=IPI:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0043565sequence-specific DNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.687; coverage=88.158; evalue=7.61e-151; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT1G13450KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.687; coverage=88.158; evalue=7.61e-151UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT1G76880KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=31.783; coverage=33.947; evalue=3.27e-10UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT2G38250KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=33.571; coverage=36.842; evalue=2.03e-12UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT3G25990KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=55.409; coverage=99.737; evalue=1.01e-149UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT5G01380KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=32.323; coverage=26.053; evalue=4.52e-10UniProtKB/Swiss-Prot DAT 2026 current_release