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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_025619
Query referenceOH1004
LocationChr05:114369642-114377071 (-)
DescriptionSimilar to SPK1: Guanine nucleotide exchange factor SPIKE 1 (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_025619 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 25 GO annotations and 2 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g16340 Guanine nucleotide exchange factor (GEF) for Rho and Rac.
SPIKE1 signals originate from and assemble specialized domains of the endoplasmic reticulum.2010 · DOI: 10.1016/j.cub.2010.11.016
A ROP GTPase-dependent auxin signaling pathway regulates the subcellular distribution of PIN2 in Arabidopsis roots.2012 · DOI: 10.1016/j.cub.2012.05.019

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0007264small GTPase-mediated signal transductionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=79.008; coverage=98.534; evalue=0.0; UniProt GO evidence=IEA:InterProUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0008064regulation of actin polymerization or depolymerizationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=79.008; coverage=98.534; evalue=0.0; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0008360regulation of cell shapeBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=79.008; coverage=98.534; evalue=0.0; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009734auxin-activated signaling pathwayBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=79.008; coverage=98.534; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009958positive gravitropismBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=79.008; coverage=98.534; evalue=0.0; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010928regulation of auxin mediated signaling pathwayBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=79.008; coverage=98.534; evalue=0.0; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016192vesicle-mediated transportBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=79.008; coverage=98.534; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0035023regulation of Rho protein signal transductionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=79.008; coverage=98.534; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0043547positive regulation of GTPase activityBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=24.542; coverage=65.255; evalue=8.48e-71; UniProt GO evidence=ISO:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0043622cortical microtubule organizationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=79.008; coverage=98.534; evalue=0.0; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0048446petal morphogenesisBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=79.008; coverage=98.534; evalue=0.0; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0051211anisotropic cell growthBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=79.008; coverage=98.534; evalue=0.0; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0051491positive regulation of filopodium assemblyBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=25.888; coverage=47.394; evalue=1.3e-59; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0051493regulation of cytoskeleton organizationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=79.008; coverage=98.534; evalue=0.0; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:1990869cellular response to chemokineBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=24.542; coverage=65.255; evalue=8.48e-71; UniProt GO evidence=ISO:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=79.008; coverage=98.534; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005737cytoplasmCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=24.542; coverage=65.255; evalue=8.48e-71; UniProt GO evidence=ISO:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005789endoplasmic reticulum membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=79.008; coverage=98.534; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005829cytosolCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=24.542; coverage=65.255; evalue=8.48e-71; UniProt GO evidence=ISO:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005886plasma membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=24.542; coverage=65.255; evalue=8.48e-71; UniProt GO evidence=ISO:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0031252cell leading edgeCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=24.542; coverage=65.255; evalue=8.48e-71; UniProt GO evidence=IDA:MGIUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0031256leading edge membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=24.542; coverage=65.255; evalue=8.48e-71; UniProt GO evidence=ISO:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0031258lamellipodium membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=24.542; coverage=65.255; evalue=8.48e-71; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0070971endoplasmic reticulum exit siteCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=79.008; coverage=98.534; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005085guanyl-nucleotide exchange factor activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=79.008; coverage=98.534; evalue=0.0; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT4G16340KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=79.008; coverage=98.534; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGmmu:76088KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=24.542; coverage=65.255; evalue=8.48e-71UniProtKB/Swiss-Prot DAT 2026 current_release