Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`LXL04_025468`
Query reference	OH1004
Location	Chr05:112146358-112148437 (+)
Description	Similar to FBX5: Protein ARABIDILLO 1 (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_025468 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 20 GO annotations and 3 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g44900`	Promotes lateral root initiation and development, independently of auxin (IAA) and abscisis acid (ABA).	No verified direct reference in this release
`At3g60350`	Promotes lateral root initiation and development, independently of auxin (IAA) and abscisis acid (ABA).	No verified direct reference in this release
`At4g23100`	Seems to play an important role in controlling the expression of resistance responses like the regulation of salicylic acid (SA) and phytoalexin (camalexin) production.	The ROOT MERISTEMLESS1/CADMIUM SENSITIVE2 gene defines a glutathione-dependent pathway involved in initiation and maintenance of cell division during postembryonic root development.2000 · DOI: 10.1105/tpc.12.1.97 The biological functions of glutathione revisited in arabidopsis transgenic plants with altered glutathione levels.2001 · DOI: 10.1104/pp.126.2.564 Level of glutathione is regulated by ATP-dependent ligation of glutamate and cysteine through photosynthesis in Arabidopsis thaliana: mechanism of strong interaction of light intensity with flowering.2004 · DOI: 10.1093/pcp/pch008 Evidence for a direct link between glutathione biosynthesis and stress defense gene expression in Arabidopsis.2004 · DOI: 10.1105/tpc.104.022608 Maturation of arabidopsis seeds is dependent on glutathione biosynthesis within the embryo.2006 · DOI: 10.1104/pp.106.077982 Identification of PAD2 as a gamma-glutamylcysteine synthetase highlights the importance of glutathione in disease resistance of Arabidopsis.2007 · DOI: 10.1111/j.1365-313x.2006.02938.x RML1 and RML2, Arabidopsis genes required for cell proliferation at the root tip.1995 · DOI: 10.1104/pp.107.2.365

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0002213	defense response to insect	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=61.818; coverage=24.554; evalue=1.27e-12; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006750	glutathione biosynthetic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=61.818; coverage=24.554; evalue=1.27e-12; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009408	response to heat	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=61.818; coverage=24.554; evalue=1.27e-12; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009700	indole phytoalexin biosynthetic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=61.818; coverage=24.554; evalue=1.27e-12; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009753	response to jasmonic acid	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=61.818; coverage=24.554; evalue=1.27e-12; UniProt GO evidence=IEP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009908	flower development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=61.818; coverage=24.554; evalue=1.27e-12; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010193	response to ozone	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=61.818; coverage=24.554; evalue=1.27e-12; UniProt GO evidence=IEP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0019761	glucosinolate biosynthetic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=61.818; coverage=24.554; evalue=1.27e-12; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0042742	defense response to bacterium	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=61.818; coverage=24.554; evalue=1.27e-12; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0046686	response to cadmium ion	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=61.818; coverage=24.554; evalue=1.27e-12; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0048527	lateral root development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=70.52; coverage=77.232; evalue=1e-76; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0050832	defense response to fungus	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=61.818; coverage=24.554; evalue=1.27e-12; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0052544	defense response by callose deposition in cell wall	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=61.818; coverage=24.554; evalue=1.27e-12; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=70.52; coverage=77.232; evalue=1e-76; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005829	cytosol	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=61.818; coverage=24.554; evalue=1.27e-12; UniProt GO evidence=HDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009507	chloroplast	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=61.818; coverage=24.554; evalue=1.27e-12; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009536	plastid	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=61.818; coverage=24.554; evalue=1.27e-12; UniProt GO evidence=HDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009570	chloroplast stroma	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=61.818; coverage=24.554; evalue=1.27e-12; UniProt GO evidence=HDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0004357	glutamate-cysteine ligase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=61.818; coverage=24.554; evalue=1.27e-12; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005524	ATP binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=61.818; coverage=24.554; evalue=1.27e-12; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT2G44900	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=70.52; coverage=77.232; evalue=1e-76	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT3G60350	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=72.353; coverage=75.893; evalue=2.88e-76	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT4G23100	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=61.818; coverage=24.554; evalue=1.27e-12	UniProtKB/Swiss-Prot DAT 2026 current_release