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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_025351
Query referenceOH1004
LocationChr05:110235416-110237388 (-)
DescriptionSimilar to MTN2: 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_025351 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 11 GO annotations and 6 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g34840 Enzyme of the methionine cycle that catalyzes the irreversible cleavage of the glycosidic bond in 5'-methylthioadenosine (MTA) and S-adenosylhomocysteine (SAH/AdoHcy) to a lesser extent, to adenine and the corresponding thioribose, 5'-methylthioribose and S- ribosylhomocysteine, respectively.
The role of methionine recycling for ethylene synthesis in Arabidopsis.2007 · DOI: 10.1111/j.1365-313x.2006.02942.x
Molecular determinants of substrate specificity in plant 5'-methylthioadenosine nucleosidases.2008 · DOI: 10.1016/j.jmb.2008.01.088
Biochemical and structural characterization of 5'-methylthioadenosine nucleosidases from Arabidopsis thaliana.2009 · DOI: 10.1016/j.bbrc.2009.02.106
Inhibition of 5'-methylthioadenosine metabolism in the Yang cycle alters polyamine levels, and impairs seedling growth and reproduction in Arabidopsis.2010 · DOI: 10.1111/j.1365-313x.2010.04211.x
Mechanism of substrate specificity in 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidases.2011 · DOI: 10.1016/j.jsb.2010.06.006
At4g38800 Enzyme of the methionine cycle that catalyzes the irreversible cleavage of the glycosidic bond in 5'-methylthioadenosine (MTA) to adenine and 5'-methylthioribose.
The role of methionine recycling for ethylene synthesis in Arabidopsis.2007 · DOI: 10.1111/j.1365-313x.2006.02942.x
Molecular determinants of substrate specificity in plant 5'-methylthioadenosine nucleosidases.2008 · DOI: 10.1016/j.jmb.2008.01.088
Biochemical and structural characterization of 5'-methylthioadenosine nucleosidases from Arabidopsis thaliana.2009 · DOI: 10.1016/j.bbrc.2009.02.106
Inhibition of 5'-methylthioadenosine metabolism in the Yang cycle alters polyamine levels, and impairs seedling growth and reproduction in Arabidopsis.2010 · DOI: 10.1111/j.1365-313x.2010.04211.x

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0009116nucleoside metabolic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=69.008; coverage=90.299; evalue=2.7e-124; UniProt GO evidence=IEA:InterProUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009164nucleoside catabolic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=29.13; coverage=85.821; evalue=7e-13; UniProt GO evidence=IEA:InterProUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010087phloem or xylem histogenesisBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=69.008; coverage=90.299; evalue=2.7e-124; UniProt GO evidence=IGI:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0019284L-methionine salvage from S-adenosylmethionineBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=29.13; coverage=85.821; evalue=7e-13; UniProt GO evidence=IEA:TreeGrafterUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0019509L-methionine salvage from methylthioadenosineBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=69.008; coverage=90.299; evalue=2.7e-124; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005737cytoplasmCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=69.008; coverage=90.299; evalue=2.7e-124; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005829cytosolCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=68.182; coverage=90.299; evalue=3.35e-122; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005886plasma membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=68.182; coverage=90.299; evalue=3.35e-122; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009507chloroplastCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=69.008; coverage=90.299; evalue=2.7e-124; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0008782adenosylhomocysteine nucleosidase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=69.008; coverage=90.299; evalue=2.7e-124; UniProt GO evidence=IEA:UniProtKB-ECUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0008930methylthioadenosine nucleosidase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=69.008; coverage=90.299; evalue=2.7e-124; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT4G34840KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=69.008; coverage=90.299; evalue=2.7e-124UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT4G38800KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=68.182; coverage=90.299; evalue=3.35e-122UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGvch:VC_2379KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=29.13; coverage=85.821; evalue=7e-13UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGvcm:VCM66_2302KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=29.13; coverage=85.821; evalue=7e-13UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGvco:VC0395_A1957KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=29.13; coverage=85.821; evalue=7e-13UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGvcr:VC395_2494KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=29.13; coverage=85.821; evalue=7e-13UniProtKB/Swiss-Prot DAT 2026 current_release