Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`LXL04_025267`
Query reference	OH1004
Location	Chr05:108932339-108934927 (+)
Description	Similar to ARID3: AT-rich interactive domain-containing protein 3 (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_025267 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 17 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g17410`	AT-rich interactive domain-containing protein 3.	No verified direct reference in this release
`At1g76510`	AT-rich interactive domain-containing protein 5.	No verified direct reference in this release
`At1g20910`	AT-rich interactive domain-containing protein 6.	No verified direct reference in this release
`At1g76110`	Binds preferentially DNA with A/T-rich content.	NUCLEAR FUSION DEFECTIVE1 encodes the Arabidopsis RPL21M protein and is required for karyogamy during female gametophyte development and fertilization.2006 · DOI: 10.1104/pp.106.079319 A novel family of plant DNA-binding proteins containing both HMG-box and AT-rich interaction domains.2008 · DOI: 10.1021/bi801772k
`At1g04880`	Binds preferentially DNA with A/T-rich content.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0000741	karyogamy	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=31.746; coverage=25.0; evalue=1.17e-08; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006351	DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.802; coverage=64.087; evalue=5.99e-139; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006355	regulation of DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.802; coverage=64.087; evalue=5.99e-139; UniProt GO evidence=TAS:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006357	regulation of transcription by RNA polymerase II	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.802; coverage=64.087; evalue=5.99e-139; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009846	pollen germination	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=31.633; coverage=19.444; evalue=2.04e-07; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009860	pollen tube growth	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=31.633; coverage=19.444; evalue=2.04e-07; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010197	polar nucleus fusion	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=31.746; coverage=25.0; evalue=1.17e-08; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0019760	glucosinolate metabolic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=59.621; coverage=62.897; evalue=6.25e-124; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000118	histone deacetylase complex	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=63.438; coverage=63.492; evalue=1.08e-133; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.802; coverage=64.087; evalue=5.99e-139; UniProt GO evidence=ISM:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0032991	protein-containing complex	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.802; coverage=64.087; evalue=5.99e-139; UniProt GO evidence=IPI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0090406	pollen tube	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=31.633; coverage=19.444; evalue=2.04e-07; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000400	four-way junction DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=31.633; coverage=19.444; evalue=2.04e-07; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000976	transcription cis-regulatory region binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=63.438; coverage=63.492; evalue=1.08e-133; UniProt GO evidence=IPI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003677	DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.802; coverage=64.087; evalue=5.99e-139; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003680	minor groove of adenine-thymine-rich DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=59.621; coverage=62.897; evalue=6.25e-124; UniProt GO evidence=IPI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003700	DNA-binding transcription factor activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.802; coverage=64.087; evalue=5.99e-139; UniProt GO evidence=ISS:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G04880	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=31.633; coverage=19.444; evalue=2.04e-07	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G20910	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=59.621; coverage=62.897; evalue=6.25e-124	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G76110	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=31.746; coverage=25.0; evalue=1.17e-08	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G76510	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=63.438; coverage=63.492; evalue=1.08e-133	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT2G17410	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.802; coverage=64.087; evalue=5.99e-139	UniProtKB/Swiss-Prot DAT 2026 current_release