Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_025248 |
|---|---|
| Query reference | OH1004 |
| Location | Chr05:108614004-108620686 (+) |
| Description | Similar to PRIN2: Protein PLASTID REDOX INSENSITIVE 2%2C chloroplastic (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_025248 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 7 GO annotations and 3 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At1g10522 |
Involved in redox-mediated retrograde signaling to synchronize the expression of photosynthetic genes from both the nuclear and plastidic genomes, especially in excess light conditions. |
Rice
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
Os09g0382400 |
Required for the activity of the plastid-encoded RNA polymerase (PEP) and full expression of genes transcribed by PEP. | No verified direct reference in this release |
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0006351 | DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=73.276; coverage=14.758; evalue=4.07e-57; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009642 | response to light intensity | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=73.276; coverage=14.758; evalue=4.07e-57; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010468 | regulation of gene expression | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=73.276; coverage=14.758; evalue=4.07e-57; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000427 | plastid-encoded plastid RNA polymerase complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=73.276; coverage=14.758; evalue=4.07e-57; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042644 | chloroplast nucleoid | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=73.276; coverage=14.758; evalue=4.07e-57; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042646 | plastid nucleoid | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=73.276; coverage=14.758; evalue=4.07e-57; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003677 | DNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=73.276; coverage=14.758; evalue=4.07e-57; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT1G10522 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=73.276; coverage=14.758; evalue=4.07e-57 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | dosa:Os09g0382400 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=48.819; coverage=16.158; evalue=1.91e-26 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | zma:100278908 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=57.944; coverage=13.613; evalue=9.65e-28 | UniProtKB/Swiss-Prot DAT 2026 current_release |