Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_025205 |
|---|---|
| Query reference | OH1004 |
| Location | Chr05:107497788-107499097 (-) |
| Description | Similar to WHY1: Single-stranded DNA-binding protein WHY1%2C chloroplastic (Solanum tuberosum OX%3D4113) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_025205 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 28 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At1g14410 |
Single-stranded DNA-binding protein that functions in both chloroplasts and nucleus. |
A "Whirly" transcription factor is required for salicylic acid-dependent disease resistance in Arabidopsis.2004 · DOI: 10.1016/s1534-5807(04)00028-0 Single-stranded DNA binding factor AtWHY1 modulates telomere length homeostasis in Arabidopsis.2007 · DOI: 10.1111/j.1365-313x.2006.02974.x
|
At2g02740 |
Single-stranded DNA-binding protein that functions in both chloroplasts and nucleus. |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0006281 | DNA repair | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=68.142; coverage=89.683; evalue=1.23e-112; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006351 | DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.852; coverage=85.714; evalue=1e-120; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006355 | regulation of DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=71.946; coverage=87.698; evalue=1.34e-112; UniProt GO evidence=IEA:InterPro | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006952 | defense response | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=68.142; coverage=89.683; evalue=1.23e-112; UniProt GO evidence=TAS:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009627 | systemic acquired resistance | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=68.142; coverage=89.683; evalue=1.23e-112; UniProt GO evidence=IMP:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009863 | salicylic acid mediated signaling pathway | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=68.142; coverage=89.683; evalue=1.23e-112; UniProt GO evidence=IDA:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0032204 | regulation of telomere maintenance | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=68.142; coverage=89.683; evalue=1.23e-112; UniProt GO evidence=IMP:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0032211 | negative regulation of telomere maintenance via telomerase | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=68.142; coverage=89.683; evalue=1.23e-112; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045893 | positive regulation of DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.852; coverage=85.714; evalue=1e-120; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045910 | negative regulation of DNA recombination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=67.391; coverage=73.016; evalue=2.24e-91; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0050832 | defense response to fungus | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.852; coverage=85.714; evalue=1e-120; UniProt GO evidence=TAS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000781 | chromosome, telomeric region | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=68.142; coverage=89.683; evalue=1.23e-112; UniProt GO evidence=IDA:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005576 | extracellular region | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=68.142; coverage=89.683; evalue=1.23e-112; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.852; coverage=85.714; evalue=1e-120; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005739 | mitochondrion | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=71.946; coverage=87.698; evalue=1.34e-112; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009507 | chloroplast | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.852; coverage=85.714; evalue=1e-120; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009570 | chloroplast stroma | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=71.946; coverage=87.698; evalue=1.34e-112; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042644 | chloroplast nucleoid | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=68.142; coverage=89.683; evalue=1.23e-112; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1990391 | DNA repair complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=68.142; coverage=89.683; evalue=1.23e-112; UniProt GO evidence=IEA:UniProtKB-ARBA | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000987 | cis-regulatory region sequence-specific DNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=68.142; coverage=89.683; evalue=1.23e-112; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003677 | DNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=68.142; coverage=89.683; evalue=1.23e-112; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003697 | single-stranded DNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.852; coverage=85.714; evalue=1e-120; UniProt GO evidence=IEA:InterPro | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003700 | DNA-binding transcription factor activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.852; coverage=85.714; evalue=1e-120; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003714 | transcription corepressor activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=68.142; coverage=89.683; evalue=1.23e-112; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003723 | RNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=67.391; coverage=73.016; evalue=2.24e-91; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003729 | mRNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=68.142; coverage=89.683; evalue=1.23e-112; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042162 | telomeric DNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=68.142; coverage=89.683; evalue=1.23e-112; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0043565 | sequence-specific DNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.852; coverage=85.714; evalue=1e-120; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT1G14410 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=68.142; coverage=89.683; evalue=1.23e-112 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT2G02740 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=71.946; coverage=87.698; evalue=1.34e-112 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | sot:102577544 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.852; coverage=85.714; evalue=1e-120 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | sot:102577630 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=47.093; coverage=68.254; evalue=2.46e-55 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | zma:100170235 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=67.391; coverage=73.016; evalue=2.24e-91 | UniProtKB/Swiss-Prot DAT 2026 current_release |