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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_024928
Query referenceOH1004
LocationChr05:102325648-102326064 (-)
DescriptionSimilar to XERICO: Probable E3 ubiquitin-protein ligase XERICO (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_024928 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 31 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g04240 Function on abscisic acid homeostasis at post-translational level, probably through ubiquitin/proteasome-dependent substrate- specific degradation.
Upregulation of an Arabidopsis RING-H2 gene, XERICO, confers drought tolerance through increased abscisic acid biosynthesis.2006 · DOI: 10.1111/j.1365-313x.2006.02782.x
Global analysis of della direct targets in early gibberellin signaling in Arabidopsis.2007 · DOI: 10.1105/tpc.107.054999
At3g61460 May be involved in the brassinosteroids (BRs) signaling pathway and regulate the growth and development of rosette leaves.
Characterisation of BRH1, a brassinosteroid-responsive RING-H2 gene from Arabidopsis thaliana.2002 · DOI: 10.1007/s00425-001-0723-z
Overexpressed BRH1, a RING finger gene, alters rosette leaf shape in Arabidopsis thaliana.2018 · DOI: 10.1007/s11427-017-9133-8
At1g15100 E3 ubiquitin-protein ligase involved in the positive regulation of abscisic acid (ABA) signaling and responses to salt and osmotic stresses during seed germination and early seedling development.
The Arabidopsis RING finger E3 ligase RHA2a is a novel positive regulator of abscisic acid signaling during seed germination and early seedling development.2009 · DOI: 10.1104/pp.109.135269
The Arabidopsis RING finger E3 ligase RHA2b acts additively with RHA2a in regulating abscisic acid signaling and drought response.2011 · DOI: 10.1104/pp.111.176214

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0006511ubiquitin-dependent protein catabolic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=47.917; coverage=34.783; evalue=6.37e-09; UniProt GO evidence=ISS:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006970response to osmotic stressBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.167; coverage=34.783; evalue=9.58e-11; UniProt GO evidence=IEP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009651response to salt stressBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.167; coverage=34.783; evalue=9.58e-11; UniProt GO evidence=IEP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009687abscisic acid metabolic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.167; coverage=34.783; evalue=9.58e-11; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009688abscisic acid biosynthetic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.167; coverage=34.783; evalue=9.58e-11; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009738abscisic acid-activated signaling pathwayBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=42.424; coverage=47.826; evalue=7.92e-09; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009739response to gibberellinBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.167; coverage=34.783; evalue=9.58e-11; UniProt GO evidence=IEP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009741response to brassinosteroidBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=39.759; coverage=60.145; evalue=3.19e-09; UniProt GO evidence=IEP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009742brassinosteroid mediated signaling pathwayBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=39.759; coverage=60.145; evalue=3.19e-09; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009789positive regulation of abscisic acid-activated signaling pathwayBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=42.424; coverage=47.826; evalue=7.92e-09; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010200response to chitinBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=39.759; coverage=60.145; evalue=3.19e-09; UniProt GO evidence=IEP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0012501programmed cell deathBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=44.681; coverage=34.058; evalue=1.36e-08; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016055Wnt signaling pathwayBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=47.917; coverage=34.783; evalue=6.37e-09; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016567protein ubiquitinationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.167; coverage=34.783; evalue=9.58e-11; UniProt GO evidence=IEA:UniProtKB-UniPathwayUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0030178negative regulation of Wnt signaling pathwayBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=47.917; coverage=34.783; evalue=6.37e-09; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0038018Wnt receptor catabolic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=47.917; coverage=34.783; evalue=6.37e-09; UniProt GO evidence=ISS:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0047484regulation of response to osmotic stressBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=42.424; coverage=47.826; evalue=7.92e-09; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0072089stem cell proliferationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=47.917; coverage=34.783; evalue=6.37e-09; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:1901371regulation of leaf morphogenesisBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=39.759; coverage=60.145; evalue=3.19e-09; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:1905421regulation of plant organ morphogenesisBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=39.759; coverage=60.145; evalue=3.19e-09; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=39.759; coverage=60.145; evalue=3.19e-09; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005635nuclear envelopeCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=47.917; coverage=34.783; evalue=6.37e-09; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005737cytoplasmCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=42.424; coverage=47.826; evalue=7.92e-09; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005789endoplasmic reticulum membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=47.917; coverage=34.783; evalue=6.37e-09; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005886plasma membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=47.917; coverage=34.783; evalue=6.37e-09; UniProt GO evidence=ISS:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009507chloroplastCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.167; coverage=34.783; evalue=9.58e-11; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016020membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.167; coverage=34.783; evalue=9.58e-11; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0004842ubiquitin-protein transferase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=47.917; coverage=34.783; evalue=6.37e-09; UniProt GO evidence=ISS:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005109frizzled bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=47.917; coverage=34.783; evalue=6.37e-09; UniProt GO evidence=ISO:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0008270zinc ion bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.167; coverage=34.783; evalue=9.58e-11; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0061630ubiquitin protein ligase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.167; coverage=34.783; evalue=9.58e-11; UniProt GO evidence=IEA:UniProtKB-ECUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT1G15100KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=42.424; coverage=47.826; evalue=7.92e-09UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT2G04240KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.167; coverage=34.783; evalue=9.58e-11UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT3G61460KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=39.759; coverage=60.145; evalue=3.19e-09UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGmmu:207742KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=47.917; coverage=34.783; evalue=6.37e-09UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGmmu:59044KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=44.681; coverage=34.058; evalue=1.36e-08UniProtKB/Swiss-Prot DAT 2026 current_release