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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_024666
Query referenceOH1004
LocationChr05:96319947-96320714 (+)
DescriptionSimilar to CSP1: Cold shock protein 1 (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_024666 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 28 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g36020 Chaperone that binds to RNA, single- (ssDNA) and double-stranded (dsDNA) DNA, and unwinds nucleic acid duplex.
Cold shock domain proteins and glycine-rich RNA-binding proteins from Arabidopsis thaliana can promote the cold adaptation process in Escherichia coli.2007 · DOI: 10.1093/nar/gkl1076
Cold shock domain proteins affect seed germination and growth of Arabidopsis thaliana under abiotic stress conditions.2009 · DOI: 10.1093/pcp/pcp037
At2g17870 Chaperone that binds to RNA, single- (ssDNA) and double-stranded (dsDNA) DNA, and unwinds nucleic acid duplex.
Cold shock domain protein 3 regulates freezing tolerance in Arabidopsis thaliana.2009 · DOI: 10.1074/jbc.m109.025791

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0000122negative regulation of transcription by RNA polymerase IIBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=40.984; coverage=47.843; evalue=2.52e-17; UniProt GO evidence=ISO:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006351DNA-templated transcriptionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=40.323; coverage=48.627; evalue=2.4e-17; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0008284positive regulation of cell population proliferationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=40.984; coverage=47.843; evalue=2.52e-17; UniProt GO evidence=IDA:MGIUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009409response to coldBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=41.356; coverage=115.686; evalue=2.99e-40; UniProt GO evidence=IEP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009414response to water deprivationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=41.356; coverage=115.686; evalue=2.99e-40; UniProt GO evidence=IEP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009631cold acclimationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=41.356; coverage=115.686; evalue=2.99e-40; UniProt GO evidence=IGI:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009651response to salt stressBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=41.356; coverage=115.686; evalue=2.99e-40; UniProt GO evidence=IEP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009826unidimensional cell growthBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=42.612; coverage=114.118; evalue=4.61e-28; UniProt GO evidence=IMP:CACAOUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0045893positive regulation of DNA-templated transcriptionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=40.984; coverage=47.843; evalue=2.52e-17; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0045944positive regulation of transcription by RNA polymerase IIBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=40.984; coverage=47.843; evalue=2.52e-17; UniProt GO evidence=IDA:MGIUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0071919G-quadruplex DNA formationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=40.984; coverage=47.843; evalue=2.52e-17; UniProt GO evidence=ISO:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:2000767positive regulation of cytoplasmic translationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=40.323; coverage=48.627; evalue=2.4e-17; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=41.356; coverage=115.686; evalue=2.99e-40; UniProt GO evidence=ISS:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005737cytoplasmCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=41.356; coverage=115.686; evalue=2.99e-40; UniProt GO evidence=ISS:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005739mitochondrionCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=42.612; coverage=114.118; evalue=4.61e-28; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005783endoplasmic reticulumCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=40.323; coverage=48.627; evalue=2.4e-17; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005829cytosolCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=40.984; coverage=47.843; evalue=2.52e-17; UniProt GO evidence=IDA:MGIUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005886plasma membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=41.356; coverage=115.686; evalue=2.99e-40; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003677DNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=42.612; coverage=114.118; evalue=4.61e-28; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003690double-stranded DNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=41.356; coverage=115.686; evalue=2.99e-40; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003697single-stranded DNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=41.356; coverage=115.686; evalue=2.99e-40; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003723RNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=41.356; coverage=115.686; evalue=2.99e-40; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003727single-stranded RNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=40.323; coverage=48.627; evalue=2.4e-17; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003729mRNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=41.356; coverage=115.686; evalue=2.99e-40; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0008270zinc ion bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=41.356; coverage=115.686; evalue=2.99e-40; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0045182translation regulator activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=40.323; coverage=48.627; evalue=2.4e-17; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0051880G-quadruplex DNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=40.984; coverage=47.843; evalue=2.52e-17; UniProt GO evidence=ISO:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0140691RNA folding chaperoneMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=41.356; coverage=115.686; evalue=2.99e-40; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT2G17870KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=42.612; coverage=114.118; evalue=4.61e-28UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT4G36020KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=41.356; coverage=115.686; evalue=2.99e-40UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGbta:504831KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=40.984; coverage=47.843; evalue=2.6e-17UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGgga:395731KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=40.323; coverage=48.627; evalue=2.4e-17UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGmmu:12785KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=40.984; coverage=47.843; evalue=2.52e-17UniProtKB/Swiss-Prot DAT 2026 current_release