Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_024652 |
|---|---|
| Query reference | OH1004 |
| Location | Chr05:96002408-96004748 (+) |
| Description | Similar to ALKBH9B: RNA demethylase ALKBH9B (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_024652 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 28 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At2g17970 |
Dioxygenase that demethylates RNA by oxidative demethylation: specifically demethylates N(6)-methyladenosine (m6A) RNA, the most prevalent internal modification of messenger RNA (mRNA) in higher eukaryotes. | |
At4g02940 |
May catalyze oxidative demethylation of N6-methyladenosine (m⁶A) in RNA. |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0001666 | response to hypoxia | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=30.222; coverage=39.613; evalue=9.33e-15; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006397 | mRNA processing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=30.222; coverage=39.613; evalue=9.33e-15; UniProt GO evidence=IEA:InterPro | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006402 | mRNA catabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.616; coverage=76.937; evalue=0.0; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006417 | regulation of translation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=30.222; coverage=39.613; evalue=9.33e-15; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0007283 | spermatogenesis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=30.222; coverage=39.613; evalue=9.33e-15; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010228 | vegetative to reproductive phase transition of meristem | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=32.599; coverage=39.965; evalue=3.33e-31; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010793 | regulation of mRNA export from nucleus | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=30.222; coverage=39.613; evalue=9.33e-15; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0030154 | cell differentiation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=30.808; coverage=34.859; evalue=3.43e-14; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0043488 | regulation of mRNA stability | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=30.808; coverage=34.859; evalue=3.43e-14; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0050684 | regulation of mRNA processing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=30.222; coverage=39.613; evalue=9.33e-15; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0061157 | mRNA destabilization | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=30.222; coverage=39.613; evalue=9.33e-15; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0070988 | demethylation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.616; coverage=76.937; evalue=0.0; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0140694 | membraneless organelle assembly | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=30.222; coverage=39.613; evalue=9.33e-15; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000932 | P-body | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.616; coverage=76.937; evalue=0.0; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.616; coverage=76.937; evalue=0.0; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005654 | nucleoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=30.808; coverage=34.859; evalue=3.59e-14; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005794 | Golgi apparatus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=30.808; coverage=34.859; evalue=3.59e-14; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005829 | cytosol | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=30.808; coverage=34.859; evalue=3.59e-14; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009506 | plasmodesma | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.616; coverage=76.937; evalue=0.0; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016607 | nuclear speck | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=30.222; coverage=39.613; evalue=9.33e-15; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042382 | paraspeckles | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=30.222; coverage=39.613; evalue=9.33e-15; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003729 | mRNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.616; coverage=76.937; evalue=0.0; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016706 | 2-oxoglutarate-dependent dioxygenase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=30.222; coverage=39.613; evalue=9.33e-15; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0032451 | demethylase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.616; coverage=76.937; evalue=0.0; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0035515 | oxidative RNA demethylase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=30.222; coverage=39.613; evalue=9.33e-15; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0046872 | metal ion binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.616; coverage=76.937; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0140693 | molecular condensate scaffold activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=30.222; coverage=39.613; evalue=9.33e-15; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1990931 | mRNA N6-methyladenosine dioxygenase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.616; coverage=76.937; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-EC | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT2G17970 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.616; coverage=76.937; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT4G02940 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=32.599; coverage=39.965; evalue=3.33e-31 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | mmu:268420 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=30.808; coverage=34.859; evalue=3.59e-14 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | rno:303193 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=30.808; coverage=34.859; evalue=3.43e-14 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | xtr:493400 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=30.222; coverage=39.613; evalue=9.33e-15 | UniProtKB/Swiss-Prot DAT 2026 current_release |