Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_024531 |
|---|---|
| Query reference | OH1004 |
| Location | Chr05:93159005-93160081 (-) |
| Description | Similar to GGPS1: Geranylgeranyl pyrophosphate synthase%2C chloroplastic (Catharanthus roseus OX%3D4058) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_024531 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 18 GO annotations and 1 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At4g36810 |
Heterodimeric geranyl(geranyl)-diphosphate (GPP) synthase large subunit. | No verified direct reference in this release |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0006720 | isoprenoid metabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=66.571; coverage=97.765; evalue=9.84e-166; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008299 | isoprenoid biosynthetic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=79.195; coverage=83.24; evalue=5.63e-173; UniProt GO evidence=TAS:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009793 | embryo development ending in seed dormancy | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=79.195; coverage=83.24; evalue=5.63e-173; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016117 | carotenoid biosynthetic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.51; coverage=99.721; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0033384 | geranyl diphosphate biosynthetic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.51; coverage=99.721; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-UniPathway | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0033386 | geranylgeranyl diphosphate biosynthetic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.51; coverage=99.721; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-UniPathway | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0043693 | monoterpene biosynthetic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=79.195; coverage=83.24; evalue=5.63e-173; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045337 | farnesyl diphosphate biosynthetic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.51; coverage=99.721; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-UniPathway | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005829 | cytosol | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=79.195; coverage=83.24; evalue=5.63e-173; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009507 | chloroplast | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.51; coverage=99.721; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009509 | chromoplast | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=79.125; coverage=82.961; evalue=2.79e-171; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009513 | etioplast | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=79.195; coverage=83.24; evalue=5.63e-173; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009536 | plastid | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=79.195; coverage=83.24; evalue=5.63e-173; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009570 | chloroplast stroma | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=79.125; coverage=82.961; evalue=2.79e-171; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0004161 | dimethylallyltranstransferase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.51; coverage=99.721; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-EC | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0004311 | geranylgeranyl diphosphate synthase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.51; coverage=99.721; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-EC | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0004337 | (2E,6E)-farnesyl diphosphate synthase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.51; coverage=99.721; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-EC | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0046872 | metal ion binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.51; coverage=99.721; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT4G36810 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=79.195; coverage=83.24; evalue=5.63e-173 | UniProtKB/Swiss-Prot DAT 2026 current_release |