Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_024168 |
|---|---|
| Query reference | OH1004 |
| Location | Chr05:83060066-83062007 (-) |
| Description | Similar to RBG3: Glycine-rich RNA-binding protein 3%2C mitochondrial (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_024168 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 35 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At5g61030 |
Possibly has a role in RNA transcription or processing during stress (By similarity). | |
At3g23830 |
Possibly has a role in RNA transcription or processing during stress. | |
At4g13850 |
Promotes the cis-splicing and editing of several mitochondrial RNAs (including NAD5 transcripts). | No verified direct reference in this release |
At1g74230 |
Possibly has a role in RNA transcription or processing during stress (By similarity). |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0006397 | mRNA processing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=46.939; coverage=50.342; evalue=6.64e-39; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006858 | extracellular transport | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=43.671; coverage=54.11; evalue=3.34e-30; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006970 | response to osmotic stress | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=43.671; coverage=54.11; evalue=3.34e-30; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009409 | response to cold | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=46.939; coverage=50.342; evalue=6.64e-39; UniProt GO evidence=IEP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009414 | response to water deprivation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=43.671; coverage=54.11; evalue=3.34e-30; UniProt GO evidence=IEP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009631 | cold acclimation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=40.541; coverage=50.685; evalue=1.02e-26; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009651 | response to salt stress | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=43.671; coverage=54.11; evalue=3.34e-30; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009845 | seed germination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=40.541; coverage=50.685; evalue=1.02e-26; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016554 | cytidine to uridine editing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=46.939; coverage=50.342; evalue=6.64e-39; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0050658 | RNA transport | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=43.671; coverage=54.11; evalue=3.34e-30; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0050688 | regulation of defense response to virus | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=43.671; coverage=54.11; evalue=3.34e-30; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0060567 | negative regulation of termination of DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=40.541; coverage=50.685; evalue=1.02e-26; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0080156 | mitochondrial mRNA modification | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=46.939; coverage=50.342; evalue=6.64e-39; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0090615 | mitochondrial mRNA processing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=40.541; coverage=50.685; evalue=1.02e-26; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1900864 | mitochondrial RNA modification | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=43.671; coverage=54.11; evalue=3.34e-30; UniProt GO evidence=IGI:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1901259 | chloroplast rRNA processing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=39.13; coverage=39.384; evalue=3.75e-19; UniProt GO evidence=IEA:TreeGrafter | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1990428 | miRNA transport | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=43.671; coverage=54.11; evalue=3.34e-30; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005615 | extracellular space | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=43.671; coverage=54.11; evalue=3.34e-30; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=39.409; coverage=69.521; evalue=2.7e-23; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005737 | cytoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=46.939; coverage=50.342; evalue=6.64e-39; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005739 | mitochondrion | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=46.939; coverage=50.342; evalue=6.64e-39; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005829 | cytosol | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=43.671; coverage=54.11; evalue=3.34e-30; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009535 | chloroplast thylakoid membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=39.13; coverage=39.384; evalue=3.75e-19; UniProt GO evidence=IEA:TreeGrafter | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1990904 | ribonucleoprotein complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=39.13; coverage=39.384; evalue=3.75e-19; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003690 | double-stranded DNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=43.671; coverage=54.11; evalue=3.34e-30; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003697 | single-stranded DNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=46.939; coverage=50.342; evalue=6.64e-39; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003723 | RNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=46.939; coverage=50.342; evalue=6.64e-39; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003727 | single-stranded RNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=43.671; coverage=54.11; evalue=3.34e-30; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003729 | mRNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=46.939; coverage=50.342; evalue=6.64e-39; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005507 | copper ion binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=46.939; coverage=50.342; evalue=6.64e-39; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005524 | ATP binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=46.939; coverage=50.342; evalue=6.64e-39; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0034336 | misfolded RNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=40.541; coverage=50.685; evalue=1.02e-26; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0035197 | siRNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=43.671; coverage=54.11; evalue=3.34e-30; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0035198 | miRNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=43.671; coverage=54.11; evalue=3.34e-30; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042803 | protein homodimerization activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=39.409; coverage=69.521; evalue=2.7e-23; UniProt GO evidence=IPI:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT1G74230 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=39.409; coverage=69.521; evalue=2.7e-23 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT3G23830 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=43.671; coverage=54.11; evalue=3.34e-30 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT4G13850 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=40.541; coverage=50.685; evalue=1.02e-26 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT5G61030 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=46.939; coverage=50.342; evalue=6.64e-39 | UniProtKB/Swiss-Prot DAT 2026 current_release |