Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_023951 |
|---|---|
| Query reference | OH1004 |
| Location | Chr05:75285391-75287214 (-) |
| Description | Similar to VCS: Enhancer of mRNA-decapping protein 4 (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_023951 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 31 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At3g13300 |
As a component of the decapping complex, involved in the degradation of mRNAs. | No verified direct reference in this release |
At3g13290 |
As a component of the decapping complex, may play a role in the degradation of mRNAs. | No verified direct reference in this release |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0000122 | negative regulation of transcription by RNA polymerase II | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=76.471; coverage=11.604; evalue=1.95e-08; UniProt GO evidence=IGI:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006397 | mRNA processing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.667; coverage=51.195; evalue=9.4e-45; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006402 | mRNA catabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.667; coverage=51.195; evalue=9.4e-45; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006457 | protein folding | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=76.471; coverage=11.604; evalue=1.95e-08; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006986 | response to unfolded protein | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=76.471; coverage=11.604; evalue=1.95e-08; UniProt GO evidence=IEA:Ensembl | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0007186 | G protein-coupled receptor signaling pathway | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=58.389; coverage=50.853; evalue=1.7e-44; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009791 | post-embryonic development | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.667; coverage=51.195; evalue=9.4e-45; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009965 | leaf morphogenesis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.667; coverage=51.195; evalue=9.4e-45; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010071 | root meristem specification | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.667; coverage=51.195; evalue=9.4e-45; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010072 | primary shoot apical meristem specification | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.667; coverage=51.195; evalue=9.4e-45; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031087 | deadenylation-independent decapping of nuclear-transcribed mRNA | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.667; coverage=51.195; evalue=9.4e-45; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0034605 | cellular response to heat | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=75.758; coverage=11.263; evalue=3.04e-08; UniProt GO evidence=IEA:Ensembl | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071365 | cellular response to auxin stimulus | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.667; coverage=51.195; evalue=9.4e-45; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0090084 | negative regulation of inclusion body assembly | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=75.758; coverage=11.263; evalue=3.04e-08; UniProt GO evidence=IEA:Ensembl | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1903334 | positive regulation of protein folding | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=75.758; coverage=11.263; evalue=3.04e-08; UniProt GO evidence=IEA:Ensembl | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000932 | P-body | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.667; coverage=51.195; evalue=9.4e-45; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.667; coverage=51.195; evalue=9.4e-45; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005654 | nucleoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=75.758; coverage=11.263; evalue=3.04e-08; UniProt GO evidence=IEA:Ensembl | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005730 | nucleolus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=75.758; coverage=11.263; evalue=3.04e-08; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005829 | cytosol | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=76.471; coverage=11.604; evalue=1.95e-08; UniProt GO evidence=IDA:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010494 | cytoplasmic stress granule | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.667; coverage=51.195; evalue=9.4e-45; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0001671 | ATPase activator activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=75.758; coverage=11.263; evalue=3.04e-08; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003714 | transcription corepressor activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=75.758; coverage=11.263; evalue=3.04e-08; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003729 | mRNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.667; coverage=51.195; evalue=9.4e-45; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0030544 | Hsp70 protein binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=75.758; coverage=11.263; evalue=3.04e-08; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042803 | protein homodimerization activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.667; coverage=51.195; evalue=9.4e-45; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0044183 | protein folding chaperone | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=75.758; coverage=11.263; evalue=3.04e-08; UniProt GO evidence=IEA:Ensembl | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0051082 | unfolded protein binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=76.471; coverage=11.604; evalue=1.95e-08; UniProt GO evidence=ISS:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0051087 | protein-folding chaperone binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=76.471; coverage=11.604; evalue=1.95e-08; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0051117 | ATPase binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=75.758; coverage=11.263; evalue=3.04e-08; UniProt GO evidence=IEA:Ensembl | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0140416 | transcription regulator inhibitor activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=75.758; coverage=11.263; evalue=3.04e-08; UniProt GO evidence=IEA:Ensembl | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT3G13290 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=58.389; coverage=50.853; evalue=1.7e-44 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT3G13300 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.667; coverage=51.195; evalue=9.4e-45 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | bta:538426 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=75.758; coverage=11.263; evalue=3.04e-08 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | bta:540083 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=76.471; coverage=11.604; evalue=3.21e-08 | UniProtKB/Swiss-Prot DAT 2026 current_release |