Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`LXL04_023711`
Query reference	OH1004
Location	Chr05:64536479-64539558 (-)
Description	Similar to FUS3: B3 domain-containing transcription factor FUS3 (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_023711 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 27 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g26790`	Transcription regulator involved in gene regulation during late embryogenesis.	The FUS3 transcription factor functions through the epidermal regulator TTG1 during embryogenesis in Arabidopsis.2004 · DOI: 10.1046/j.1365-313x.2003.01939.x The transcription factor FUSCA3 controls developmental timing in Arabidopsis through the hormones gibberellin and abscisic acid.2004 · DOI: 10.1016/j.devcel.2004.06.017 AKIN10 and FUSCA3 interact to control lateral organ development and phase transitions in Arabidopsis.2012 · DOI: 10.1111/j.1365-313x.2011.04832.x Overlapping and distinct roles of AKIN10 and FUSCA3 in ABA and sugar signaling during seed germination.2012 · DOI: 10.4161/psb.21549
`At3g24650`	Participates in abscisic acid-regulated gene expression during seed development.	A pivotal role of the basic leucine zipper transcription factor bZIP53 in the regulation of Arabidopsis seed maturation gene expression based on heterodimerization and protein complex formation.2009 · DOI: 10.1105/tpc.108.062968 ABI3 controls embryo degreening through Mendel's I locus.2013 · DOI: 10.1073/pnas.1308114110

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0911700`	Probable transcription factor that may participate in abscisic acid-regulated gene expression during seed development.	No verified direct reference in this release
`Os01g0713600`	Transcription repressor involved in flowering time regulation.	Ectopic expression of OsLFL1 in rice represses Ehd1 by binding on its promoter.2007 · DOI: 10.1016/j.bbrc.2007.06.041 Overexpression of transcription factor OsLFL1 delays flowering time in Oryza sativa.2008 · DOI: 10.1016/j.jplph.2007.07.010

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0006351	DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=41.429; coverage=78.212; evalue=2.83e-54; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006355	regulation of DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=53.704; coverage=30.168; evalue=7.18e-30; UniProt GO evidence=TAS:TIGR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0008284	positive regulation of cell population proliferation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=41.429; coverage=78.212; evalue=2.83e-54; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009657	plastid organization	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=53.704; coverage=30.168; evalue=7.18e-30; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009733	response to auxin	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=41.429; coverage=78.212; evalue=2.83e-54; UniProt GO evidence=IEP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009737	response to abscisic acid	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=53.704; coverage=30.168; evalue=7.18e-30; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009738	abscisic acid-activated signaling pathway	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=46.97; coverage=36.872; evalue=2.2e-31; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009789	positive regulation of abscisic acid-activated signaling pathway	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=41.429; coverage=78.212; evalue=2.83e-54; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009793	embryo development ending in seed dormancy	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=41.429; coverage=78.212; evalue=2.83e-54; UniProt GO evidence=IGI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009908	flower development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=46.377; coverage=38.547; evalue=3.82e-29; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010116	positive regulation of abscisic acid biosynthetic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=41.429; coverage=78.212; evalue=2.83e-54; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010228	vegetative to reproductive phase transition of meristem	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=41.429; coverage=78.212; evalue=2.83e-54; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010262	somatic embryogenesis	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=41.429; coverage=78.212; evalue=2.83e-54; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010373	negative regulation of gibberellin biosynthetic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=41.429; coverage=78.212; evalue=2.83e-54; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0031930	mitochondria-nucleus signaling pathway	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=53.704; coverage=30.168; evalue=7.18e-30; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0045893	positive regulation of DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=53.704; coverage=30.168; evalue=7.18e-30; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0045995	regulation of embryonic development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=41.429; coverage=78.212; evalue=2.83e-54; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0048573	photoperiodism, flowering	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=46.377; coverage=38.547; evalue=3.82e-29; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0099402	plant organ development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=41.429; coverage=78.212; evalue=2.83e-54; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=41.429; coverage=78.212; evalue=2.83e-54; UniProt GO evidence=ISM:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005737	cytoplasm	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=46.97; coverage=36.872; evalue=2.2e-31; UniProt GO evidence=IEA:UniProtKB-SubCell	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005829	cytosol	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=53.704; coverage=30.168; evalue=7.18e-30; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000976	transcription cis-regulatory region binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=46.377; coverage=38.547; evalue=3.82e-29; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003677	DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=41.429; coverage=78.212; evalue=2.83e-54; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003700	DNA-binding transcription factor activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=41.429; coverage=78.212; evalue=2.83e-54; UniProt GO evidence=ISS:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0019900	kinase binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=41.429; coverage=78.212; evalue=2.83e-54; UniProt GO evidence=IPI:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0043565	sequence-specific DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=53.704; coverage=30.168; evalue=7.18e-30; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT3G24650	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=53.704; coverage=30.168; evalue=7.18e-30	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT3G26790	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=41.429; coverage=78.212; evalue=2.83e-54	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	dosa:Os01g0713600	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=46.377; coverage=38.547; evalue=3.82e-29	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	dosa:Os01g0911700	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=51.429; coverage=29.33; evalue=1.17e-28	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	zma:542523	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=46.97; coverage=36.872; evalue=2.2e-31	UniProtKB/Swiss-Prot DAT 2026 current_release