Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_023620 |
|---|---|
| Query reference | OH1004 |
| Location | Chr05:56450037-56451118 (-) |
| Description | Similar to At5g63670: Transcription elongation factor SPT4 homolog 2 (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_023620 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 24 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At5g63670 |
May regulate transcription elongation by RNA polymerase II. | No verified direct reference in this release |
At5g08565 |
May regulate transcription elongation by RNA polymerase II. | No verified direct reference in this release |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0006355 | regulation of DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=82.727; coverage=95.652; evalue=4.21e-67; UniProt GO evidence=IEA:InterPro | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006368 | transcription elongation by RNA polymerase II | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=82.727; coverage=95.652; evalue=4.21e-67; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006370 | 7-methylguanosine mRNA capping | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=39.796; coverage=85.217; evalue=9.45e-24; UniProt GO evidence=IEA:EnsemblFungi | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008298 | intracellular mRNA localization | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=39.796; coverage=85.217; evalue=9.45e-24; UniProt GO evidence=IEA:EnsemblFungi | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010507 | negative regulation of autophagy | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=39.796; coverage=85.217; evalue=9.45e-24; UniProt GO evidence=IEA:EnsemblFungi | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031507 | heterochromatin formation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=39.796; coverage=85.217; evalue=9.45e-24; UniProt GO evidence=IEA:EnsemblFungi | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0032785 | negative regulation of DNA-templated transcription, elongation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=40.0; coverage=91.304; evalue=4.63e-24; UniProt GO evidence=IEA:UniProtKB-ARBA | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0032968 | positive regulation of transcription elongation by RNA polymerase II | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=39.796; coverage=85.217; evalue=9.45e-24; UniProt GO evidence=IEA:EnsemblFungi | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0034243 | regulation of transcription elongation by RNA polymerase II | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=40.0; coverage=91.304; evalue=4.63e-24; UniProt GO evidence=IEA:UniProtKB-ARBA | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0090262 | regulation of transcription-coupled nucleotide-excision repair | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=39.796; coverage=85.217; evalue=9.45e-24; UniProt GO evidence=IEA:EnsemblFungi | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0140673 | transcription elongation-coupled chromatin remodeling | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=82.727; coverage=95.652; evalue=4.21e-67; UniProt GO evidence=IEA:InterPro | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:2000232 | regulation of rRNA processing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=39.796; coverage=85.217; evalue=9.45e-24; UniProt GO evidence=IEA:EnsemblFungi | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:2001208 | negative regulation of transcription elongation by RNA polymerase I | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=39.796; coverage=85.217; evalue=9.45e-24; UniProt GO evidence=IEA:EnsemblFungi | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:2001209 | positive regulation of transcription elongation by RNA polymerase I | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=39.796; coverage=85.217; evalue=9.45e-24; UniProt GO evidence=IEA:EnsemblFungi | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000776 | kinetochore | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=39.796; coverage=85.217; evalue=9.45e-24; UniProt GO evidence=IEA:EnsemblFungi | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=82.727; coverage=95.652; evalue=4.21e-67; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031934 | mating-type region heterochromatin | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=39.796; coverage=85.217; evalue=9.45e-24; UniProt GO evidence=IEA:EnsemblFungi | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0032044 | DSIF complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=82.727; coverage=95.652; evalue=4.21e-67; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0033553 | rDNA heterochromatin | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=39.796; coverage=85.217; evalue=9.45e-24; UniProt GO evidence=IEA:EnsemblFungi | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000182 | rDNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=39.796; coverage=85.217; evalue=9.45e-24; UniProt GO evidence=IEA:EnsemblFungi | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000993 | RNA polymerase II complex binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=82.727; coverage=95.652; evalue=4.21e-67; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003727 | single-stranded RNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=39.796; coverage=85.217; evalue=9.45e-24; UniProt GO evidence=IEA:EnsemblFungi | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008270 | zinc ion binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=82.727; coverage=95.652; evalue=4.21e-67; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0044877 | protein-containing complex binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=39.796; coverage=85.217; evalue=9.45e-24; UniProt GO evidence=IEA:EnsemblFungi | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT5G08565 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=80.909; coverage=95.652; evalue=1.36e-66 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT5G63670 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=82.727; coverage=95.652; evalue=4.21e-67 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | dre:436782 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=47.191; coverage=77.391; evalue=3.68e-24 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ncr:NCU03838 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=39.796; coverage=85.217; evalue=9.45e-24 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | pon:100190855 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=40.0; coverage=91.304; evalue=4.63e-24 | UniProtKB/Swiss-Prot DAT 2026 current_release |