Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_023097 |
|---|---|
| Query reference | OH1004 |
| Location | Chr05:23132761-23133360 (-) |
| Description | Similar to LSH6: Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6 (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_023097 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 13 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At1g07090 |
Probable transcription regulator that acts as a developmental regulator by promoting cell growth in response to light. | No verified direct reference in this release |
At2g31160 |
Probable transcription regulator that acts as a developmental regulator by promoting cell growth in response to light (By similarity). | |
At3g23290 |
Probable transcription regulator that acts as a developmental regulator by promoting cell growth in response to light (By similarity). |
Rice
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
Os02g0811000 |
Transcription factor required for lateral development of the lemma and palea. |
TH1, a DUF640 domain-like gene controls lemma and palea development in rice.2012 · DOI: 10.1007/s11103-011-9868-8
|
UniProt: A2XAV5 |
Probable transcription regulator that acts as a developmental regulator by promoting cell growth in response to light. | No verified direct reference in this release |
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0009299 | mRNA transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=81.119; coverage=71.859; evalue=3.5e-86; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009416 | response to light stimulus | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=81.119; coverage=71.859; evalue=3.5e-86; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010199 | organ boundary specification between lateral organs and the meristem | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=74.194; coverage=93.467; evalue=3e-85; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010492 | maintenance of shoot apical meristem identity | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=74.194; coverage=93.467; evalue=3e-85; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045892 | negative regulation of DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=90.299; coverage=67.337; evalue=1.25e-79; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0048441 | petal development | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=74.194; coverage=93.467; evalue=3e-85; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0048834 | specification of petal number | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=74.194; coverage=93.467; evalue=3e-85; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0080050 | regulation of seed development | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=90.299; coverage=67.337; evalue=1.25e-79; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0090698 | post-embryonic plant morphogenesis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=81.119; coverage=71.859; evalue=3.5e-86; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=81.119; coverage=71.859; evalue=3.5e-86; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005739 | mitochondrion | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=96.063; coverage=63.819; evalue=8.3e-81; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003677 | DNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=81.119; coverage=71.859; evalue=3.5e-86; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042803 | protein homodimerization activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=90.299; coverage=67.337; evalue=1.25e-79; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT1G07090 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=81.119; coverage=71.859; evalue=3.5e-86 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT2G31160 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=74.194; coverage=93.467; evalue=3e-85 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT3G23290 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=96.063; coverage=63.819; evalue=8.3e-81 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | dosa:Os02g0811000 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=90.299; coverage=67.337; evalue=1.25e-79 | UniProtKB/Swiss-Prot DAT 2026 current_release |